Transcript: Mouse NM_030739.2

Mus musculus vomeronasal 1 receptor 58 (Vmn1r58), mRNA.

Source:
NCBI, updated 2014-01-15
Taxon:
Mus musculus (mouse)
Gene:
Vmn1r58 (81014)
Length:
2683
CDS:
341..1273

Additional Resources:

NCBI RefSeq record:
NM_030739.2
NBCI Gene record:
Vmn1r58 (81014)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_030739.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000126094 CCTGCATAAATATGCCTGTTT pLKO.1 1627 3UTR 100% 4.950 3.465 N Vmn1r58 n/a
2 TRCN0000126097 CCACCATTTCTCCCTTTCTTT pLKO.1 1158 CDS 100% 5.625 3.375 N Vmn1r58 n/a
3 TRCN0000126887 CCAACTGACCTCAAATGTAAA pLKO.1 560 CDS 100% 13.200 6.600 Y Vmn1r180 n/a
4 TRCN0000127362 CATCCTTCTGTTTGTCCATAA pLKO.1 403 CDS 100% 10.800 5.400 Y Vmn1r62 n/a
5 TRCN0000124608 CCATAACTTCTCTCCAATCTT pLKO.1 418 CDS 100% 5.625 2.813 Y Vmn1r62 n/a
6 TRCN0000124607 CACCAGAGAATGAACCACATA pLKO.1 953 CDS 100% 4.950 2.475 Y Vmn1r62 n/a
7 TRCN0000127359 CCCATGACATCATATTCCTAA pLKO.1 882 CDS 100% 4.950 2.475 Y Vmn1r62 n/a
8 TRCN0000124525 CCTCAAATGTAAACTTGCATA pLKO.1 568 CDS 100% 4.950 2.475 Y Vmn1r63 n/a
9 TRCN0000124524 GCCATTACAGAGGGACAGTAA pLKO.1 1253 CDS 100% 4.950 2.475 Y Vmn1r63 n/a
10 TRCN0000125378 GCTAGGGTCATGTTCAGAGAA pLKO.1 680 CDS 100% 4.950 2.475 Y Vmn1r59 n/a
11 TRCN0000127360 TGCTGGTTGTTCAGTGTCTTA pLKO.1 737 CDS 100% 4.950 2.475 Y Vmn1r62 n/a
12 TRCN0000124528 CCACCAGAGAATGAACCACAT pLKO.1 952 CDS 100% 4.050 2.025 Y Vmn1r63 n/a
13 TRCN0000124604 GCAGGGTAAACTTCCTATCTT pLKO.1 1433 3UTR 100% 5.625 2.813 Y Vmn1r62 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_030739.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.