Transcript: Human NM_032330.3

Homo sapiens calpain small subunit 2 (CAPNS2), mRNA.

Source:
NCBI, updated 2019-06-30
Taxon:
Homo sapiens (human)
Gene:
CAPNS2 (84290)
Length:
1004
CDS:
74..820

Additional Resources:

NCBI RefSeq record:
NM_032330.3
NBCI Gene record:
CAPNS2 (84290)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_032330.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000056480 CGCCGGTATGCTAATGAAGAT pLKO.1 656 CDS 100% 4.950 6.930 N CAPNS2 n/a
2 TRCN0000056482 GCCTGATTCAAGTGTCTATCA pLKO.1 768 CDS 100% 4.950 6.930 N CAPNS2 n/a
3 TRCN0000422536 ACTGGTAAGCTGGGCTTTGAA pLKO_005 479 CDS 100% 5.625 3.938 N CAPNS2 n/a
4 TRCN0000056478 GCAGGCTTCCAGCTAAATGAA pLKO.1 614 CDS 100% 5.625 3.938 N CAPNS2 n/a
5 TRCN0000434890 GAATGGCTGCAGTTGACCATG pLKO_005 791 CDS 100% 4.050 2.835 N CAPNS2 n/a
6 TRCN0000056481 GCAGCTCAGTATACTCCAGAA pLKO.1 230 CDS 100% 4.050 2.835 N CAPNS2 n/a
7 TRCN0000056479 GCAGTGTGTTTATAAGCAGTA pLKO.1 535 CDS 100% 4.050 2.835 N CAPNS2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_032330.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04360 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_04360 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000468908 TCCGCGGTTCAGGCTATTGAACCA pLX_317 59.8% 100% 100% V5 n/a
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