Transcript: Mouse NM_053226.2

Mus musculus vomeronasal 1 receptor 53 (Vmn1r53), mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Vmn1r53 (113853)
Length:
1122
CDS:
99..1031

Additional Resources:

NCBI RefSeq record:
NM_053226.2
NBCI Gene record:
Vmn1r53 (113853)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_053226.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000075677 GACTTAGTTATCTTCCACTCA pLKO.1 858 CDS 100% 2.640 1.848 N Vmn1r53 n/a
2 TRCN0000075676 CGGAGGGTACATGGTAGCTCA pLKO.1 707 CDS 100% 0.880 0.616 N Vmn1r53 n/a
3 TRCN0000328197 CAGCTAACAGTATCCTTATTT pLKO_005 175 CDS 100% 15.000 9.000 N Vmn1r53 n/a
4 TRCN0000328195 CATCAGGGAAGCCTTACTTAT pLKO_005 668 CDS 100% 13.200 7.920 N Vmn1r53 n/a
5 TRCN0000075675 CCACTCAAGAATGAAGTTCAA pLKO.1 872 CDS 100% 4.950 2.970 N Vmn1r53 n/a
6 TRCN0000075673 GCTCACTTATACCTCTGAGTT pLKO.1 613 CDS 100% 4.950 2.970 N Vmn1r53 n/a
7 TRCN0000328196 CCCAACTAATGCTGCTTATAA pLKO_005 271 CDS 100% 15.000 7.500 Y Vmn1r53 n/a
8 TRCN0000339957 ATGCCAATCCCTTATCTATTT pLKO_005 350 CDS 100% 13.200 6.600 Y Vmn1r44 n/a
9 TRCN0000339959 CATAGCTGTGGACATGTTTAT pLKO_005 302 CDS 100% 13.200 6.600 Y Vmn1r44 n/a
10 TRCN0000328199 CATGCCAATCCCTTATCTATT pLKO_005 349 CDS 100% 13.200 6.600 Y Vmn1r53 n/a
11 TRCN0000328136 TCATAGCTGTGGACATGTTTA pLKO_005 301 CDS 100% 13.200 6.600 Y Vmn1r53 n/a
12 TRCN0000075682 CCCTTATCTATTTGCACAGGT pLKO.1 358 CDS 100% 2.640 1.320 Y Vmn1r44 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_053226.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.