Transcript: Mouse NM_053227.2

Mus musculus vomeronasal 1 receptor 44 (Vmn1r44), mRNA.

Source:
NCBI, updated 2017-05-20
Taxon:
Mus musculus (mouse)
Gene:
Vmn1r44 (113854)
Length:
933
CDS:
1..933

Additional Resources:

NCBI RefSeq record:
NM_053227.2
NBCI Gene record:
Vmn1r44 (113854)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_053227.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000339956 GTTCTAGAAACTCTTGTTTAG pLKO_005 344 CDS 100% 10.800 7.560 N Vmn1r44 n/a
2 TRCN0000339885 TTGCTTGCTGAAGTGAGTGTT pLKO_005 49 CDS 100% 4.950 3.465 N Vmn1r44 n/a
3 TRCN0000075678 CTAGAAACTCTTGTTTAGCAA pLKO.1 347 CDS 100% 3.000 2.100 N Vmn1r44 n/a
4 TRCN0000339883 CTTGTCCCTAACTCAACTAAT pLKO_005 162 CDS 100% 13.200 7.920 N Vmn1r44 n/a
5 TRCN0000075680 CCTTGGTGAGAACAGGCATAA pLKO.1 117 CDS 100% 10.800 6.480 N Vmn1r44 n/a
6 TRCN0000075681 CCCATGAGTTACTCCAGAACA pLKO.1 526 CDS 100% 4.950 2.970 N Vmn1r44 n/a
7 TRCN0000339957 ATGCCAATCCCTTATCTATTT pLKO_005 252 CDS 100% 13.200 6.600 Y Vmn1r44 n/a
8 TRCN0000339959 CATAGCTGTGGACATGTTTAT pLKO_005 204 CDS 100% 13.200 6.600 Y Vmn1r44 n/a
9 TRCN0000328199 CATGCCAATCCCTTATCTATT pLKO_005 251 CDS 100% 13.200 6.600 Y Vmn1r53 n/a
10 TRCN0000328136 TCATAGCTGTGGACATGTTTA pLKO_005 203 CDS 100% 13.200 6.600 Y Vmn1r53 n/a
11 TRCN0000075679 CCACTCAAGGATGAAGTTCAA pLKO.1 774 CDS 100% 4.950 2.475 Y Vmn1r44 n/a
12 TRCN0000075636 GCTCACTTCTACCCATGAGTT pLKO.1 515 CDS 100% 4.950 2.475 Y V1rb6 n/a
13 TRCN0000075682 CCCTTATCTATTTGCACAGGT pLKO.1 260 CDS 100% 2.640 1.320 Y Vmn1r44 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_053227.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.