Transcript: Human NM_058238.3

Homo sapiens Wnt family member 7B (WNT7B), mRNA.

Source:
NCBI, updated 2019-09-25
Taxon:
Homo sapiens (human)
Gene:
WNT7B (7477)
Length:
3948
CDS:
409..1458

Additional Resources:

NCBI RefSeq record:
NM_058238.3
NBCI Gene record:
WNT7B (7477)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_058238.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000061875 GCGCCTCATGAACCTGCATAA pLKO.1 939 CDS 100% 10.800 15.120 N WNT7B n/a
2 TRCN0000061873 CCCGATGCCATCATTGTGATT pLKO.1 574 CDS 100% 4.950 3.960 N WNT7B n/a
3 TRCN0000429092 GTGGCAGTGCAACTGCAAATT pLKO_005 1371 CDS 100% 13.200 9.240 N WNT7B n/a
4 TRCN0000420843 CTGTATCCCAGAGAGCAAAGT pLKO_005 1787 3UTR 100% 4.950 3.465 N WNT7B n/a
5 TRCN0000442352 AGCTATCAGAAGCCCATGGAG pLKO_005 1183 CDS 100% 2.640 1.848 N WNT7B n/a
6 TRCN0000061874 TGCAACAAGATTCCTGGCCTA pLKO.1 520 CDS 100% 2.160 1.512 N WNT7B n/a
7 TRCN0000061876 CCCACCTTCCTGCGCATCAAA pLKO.1 1153 CDS 100% 1.875 1.313 N WNT7B n/a
8 TRCN0000061877 CGTGCGTTACGGCATCGACTT pLKO.1 873 CDS 100% 1.350 0.945 N WNT7B n/a
9 TRCN0000424405 CATTGAGAAGTCGCCCAACTA pLKO_005 1218 CDS 100% 4.950 2.970 N WNT7B n/a
10 TRCN0000007228 CACCTGTAATCCCAGCACTTT pLKO.1 2273 3UTR 100% 4.950 2.475 Y CFLAR n/a
11 TRCN0000166635 CACCTGTAATCCCAGCACTTT pLKO.1 2273 3UTR 100% 4.950 2.475 Y C19orf31 n/a
12 TRCN0000021429 CACACCTGTAATCCCAGCATT pLKO.1 2271 3UTR 100% 4.950 2.475 Y ERN2 n/a
13 TRCN0000138998 CACACCTGTAATCCCAGCATT pLKO.1 2271 3UTR 100% 4.950 2.475 Y P3H4 n/a
14 TRCN0000344020 CACACCTGTAATCCCAGCATT pLKO_005 2271 3UTR 100% 4.950 2.475 Y P3H4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_058238.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01781 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_01781 pLX_304 0% 100% 100% V5 n/a
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