Transcript: Mouse NM_080555.2

Mus musculus phospholipid phosphatase 3 (Plpp3), mRNA.

Source:
NCBI, updated 2017-05-14
Taxon:
Mus musculus (mouse)
Gene:
Plpp3 (67916)
Length:
3162
CDS:
479..1417

Additional Resources:

NCBI RefSeq record:
NM_080555.2
NBCI Gene record:
Plpp3 (67916)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_080555.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000313574 ATCGAGACAAGCACCATTAAG pLKO_005 638 CDS 100% 13.200 18.480 N Plpp3 n/a
2 TRCN0000313620 GAAAGTCAGTGAGACTATAAA pLKO_005 709 CDS 100% 15.000 12.000 N Plpp3 n/a
3 TRCN0000349914 TCCGGGAATGGGCACACAATT pLKO_005 1875 3UTR 100% 13.200 10.560 N Plpp3 n/a
4 TRCN0000313575 TGATTTCAGTCAGATCAATTG pLKO_005 973 CDS 100% 10.800 7.560 N Plpp3 n/a
5 TRCN0000081250 CCCTGAAAGTCAGTGAGACTA pLKO.1 705 CDS 100% 4.950 3.465 N Plpp3 n/a
6 TRCN0000050457 CCTTCCTCATCATCGAGACAA pLKO.1 627 CDS 100% 4.950 3.465 N PLPP3 n/a
7 TRCN0000081248 CGAGGGCTACATTCAGAACTA pLKO.1 997 CDS 100% 4.950 3.465 N Plpp3 n/a
8 TRCN0000081249 CGGGTATCTGACTACAAGCAT pLKO.1 1214 CDS 100% 3.000 2.100 N Plpp3 n/a
9 TRCN0000349511 CGGGTATCTGACTACAAGCAT pLKO_005 1214 CDS 100% 3.000 2.100 N Plpp3 n/a
10 TRCN0000081252 CAATCACCATAACATGGTGTA pLKO.1 1396 CDS 100% 0.405 0.284 N Plpp3 n/a
11 TRCN0000081251 CCTGATTTCAGTCAGATCAAT pLKO.1 971 CDS 100% 5.625 3.375 N Plpp3 n/a
12 TRCN0000293521 CCTCATCCTCCATCCACAATG pLKO_005 2522 3UTR 100% 10.800 6.480 N BNIP3L n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_080555.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07272 pDONR223 100% 88.7% 94.2% None (many diffs) n/a
2 ccsbBroad304_07272 pLX_304 0% 88.7% 94.2% V5 (many diffs) n/a
3 TRCN0000470384 TCATTTAGAAATTCTAAGTCCGGT pLX_317 32.9% 88.7% 94.2% V5 (many diffs) n/a
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