Transcript: Human NM_080627.4

Homo sapiens suppressor of glucose, autophagy associated 1 (SOGA1), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-05-02
Taxon:
Homo sapiens (human)
Gene:
SOGA1 (140710)
Length:
14218
CDS:
195..5180

Additional Resources:

NCBI RefSeq record:
NM_080627.4
NBCI Gene record:
SOGA1 (140710)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_080627.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000179997 CGCTCAGCATTCTGATAACAA pLKO.1 3059 CDS 100% 5.625 7.875 N SOGA1 n/a
2 TRCN0000156225 CAGTGAGAAGATCCACGACAA pLKO.1 3611 CDS 100% 4.050 5.670 N SOGA1 n/a
3 TRCN0000155326 GAGGAGATAAACGCTCAGCAT pLKO.1 3048 CDS 100% 2.640 2.112 N SOGA1 n/a
4 TRCN0000128211 CTTCCATGTCTGAGTTTGAAA pLKO.1 3691 CDS 100% 5.625 3.938 N SOGA1 n/a
5 TRCN0000155325 GAGATGGACGACATGAAGGAT pLKO.1 1623 CDS 100% 3.000 2.100 N SOGA1 n/a
6 TRCN0000155184 GCTGTTTCCGAAGTTGAGCTT pLKO.1 3636 CDS 100% 2.640 1.848 N SOGA1 n/a
7 TRCN0000007228 CACCTGTAATCCCAGCACTTT pLKO.1 9552 3UTR 100% 4.950 2.475 Y CFLAR n/a
8 TRCN0000166635 CACCTGTAATCCCAGCACTTT pLKO.1 9552 3UTR 100% 4.950 2.475 Y C19orf31 n/a
9 TRCN0000180418 GATCACTTGAGCTCAGGAGTT pLKO.1 9591 3UTR 100% 4.050 2.025 Y ERN2 n/a
10 TRCN0000164801 CCTCCCAAAGTACTGGGATTA pLKO.1 10366 3UTR 100% 1.080 0.540 Y MAPKAPK5-AS1 n/a
11 TRCN0000021429 CACACCTGTAATCCCAGCATT pLKO.1 9550 3UTR 100% 4.950 2.475 Y ERN2 n/a
12 TRCN0000138998 CACACCTGTAATCCCAGCATT pLKO.1 9550 3UTR 100% 4.950 2.475 Y P3H4 n/a
13 TRCN0000344020 CACACCTGTAATCCCAGCATT pLKO_005 9550 3UTR 100% 4.950 2.475 Y P3H4 n/a
14 TRCN0000172742 GAGACAGAGTCTTGCTCTGTT pLKO.1 10130 3UTR 100% 0.495 0.248 Y C11orf44 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_080627.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.