Transcript: Mouse NM_080639.3

Mus musculus tissue inhibitor of metalloproteinase 4 (Timp4), mRNA.

Source:
NCBI, updated 2017-06-26
Taxon:
Mus musculus (mouse)
Gene:
Timp4 (110595)
Length:
1416
CDS:
72..746

Additional Resources:

NCBI RefSeq record:
NM_080639.3
NBCI Gene record:
Timp4 (110595)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_080639.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000080407 GCTCTAGTGATACGGGCCAAA pLKO.1 204 CDS 100% 4.050 5.670 N Timp4 n/a
2 TRCN0000052442 CATCCATCTGTGCAACTACAT pLKO.1 452 CDS 100% 4.950 3.465 N TIMP4 n/a
3 TRCN0000299337 CATCCATCTGTGCAACTACAT pLKO_005 452 CDS 100% 4.950 3.465 N TIMP4 n/a
4 TRCN0000080404 CCAGATTCTCAGTGATGGAAA pLKO.1 425 CDS 100% 4.950 3.465 N Timp4 n/a
5 TRCN0000080406 CCAGCACTATGTCTGCATGAA pLKO.1 647 CDS 100% 4.950 3.465 N Timp4 n/a
6 TRCN0000052438 CCGGTATGAAATCAAACAGAT pLKO.1 284 CDS 100% 4.950 3.465 N TIMP4 n/a
7 TRCN0000299340 CCGGTATGAAATCAAACAGAT pLKO_005 284 CDS 100% 4.950 3.465 N TIMP4 n/a
8 TRCN0000080403 GCTCACAACTTGTCAAGGGTT pLKO.1 928 3UTR 100% 2.640 1.584 N Timp4 n/a
9 TRCN0000080405 GCCTGAATCATCACTACCACA pLKO.1 511 CDS 100% 2.640 1.848 N Timp4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_080639.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01674 pDONR223 100% 87.6% 88.8% None (many diffs) n/a
2 ccsbBroad304_01674 pLX_304 0% 87.6% 88.8% V5 (many diffs) n/a
3 TRCN0000491990 CAGTGAAATTAGGACTATACCTAT pLX_317 46.9% 87.6% 88.8% V5 (many diffs) n/a
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