Transcript: Mouse NM_080795.4

Mus musculus ligand of numb-protein X 2 (Lnx2), mRNA.

Source:
NCBI, updated 2017-05-21
Taxon:
Mus musculus (mouse)
Gene:
Lnx2 (140887)
Length:
4543
CDS:
214..2277

Additional Resources:

NCBI RefSeq record:
NM_080795.4
NBCI Gene record:
Lnx2 (140887)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_080795.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000313544 ACAGAGCAGCTCGGCATTAAA pLKO_005 1252 CDS 100% 15.000 21.000 N Lnx2 n/a
2 TRCN0000040714 GCTTACTATGACGGAAGATTA pLKO.1 2119 CDS 100% 13.200 18.480 N Lnx2 n/a
3 TRCN0000349961 GAGCTCGCTGCCCAGATTATT pLKO_005 1411 CDS 100% 15.000 12.000 N Lnx2 n/a
4 TRCN0000349898 ACGACCTCGTGTGCCACATTT pLKO_005 353 CDS 100% 13.200 9.240 N Lnx2 n/a
5 TRCN0000040713 CGGCATAATGAGAAAGTAAAT pLKO.1 3343 3UTR 100% 13.200 9.240 N Lnx2 n/a
6 TRCN0000040717 GAGAGGGTGAACTTAACAATT pLKO.1 1444 CDS 100% 13.200 9.240 N Lnx2 n/a
7 TRCN0000313589 TCCTCAACTGAAGACATAAAC pLKO_005 2728 3UTR 100% 13.200 9.240 N Lnx2 n/a
8 TRCN0000040715 CCACTGATCAACATCGTCATT pLKO.1 976 CDS 100% 4.950 3.465 N Lnx2 n/a
9 TRCN0000317088 CCACTGATCAACATCGTCATT pLKO_005 976 CDS 100% 4.950 3.465 N Lnx2 n/a
10 TRCN0000040716 GCTTCATTTCAAGCTGTGTAA pLKO.1 486 CDS 100% 4.950 3.465 N Lnx2 n/a
11 TRCN0000178741 CACACACATACACACACACAA pLKO.1 3068 3UTR 100% 4.950 2.475 Y Cstad n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_080795.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05271 pDONR223 100% 80.3% 89.8% None (many diffs) n/a
2 ccsbBroad304_05271 pLX_304 0% 80.3% 89.8% V5 (many diffs) n/a
3 TRCN0000473509 AATTCCCTCATTAGGCCCCATGCG pLX_317 21.2% 80.3% 89.8% V5 (many diffs) n/a
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