Transcript: Human NM_138342.3

Homo sapiens galactosidase beta 1 like 2 (GLB1L2), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-06-04
Taxon:
Homo sapiens (human)
Gene:
GLB1L2 (89944)
Length:
3178
CDS:
189..2099

Additional Resources:

NCBI RefSeq record:
NM_138342.3
NBCI Gene record:
GLB1L2 (89944)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_138342.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000163984 CCGAAGCAGTGGACCTTTATT pLKO.1 691 CDS 100% 15.000 21.000 N GLB1L2 n/a
2 TRCN0000330548 ATCGTGGGCGAGTCAACTATG pLKO_005 1648 CDS 100% 10.800 15.120 N GLB1L2 n/a
3 TRCN0000369769 CCTTCGGGTACATTCTCTATG pLKO_005 1468 CDS 100% 10.800 15.120 N GLB1L2 n/a
4 TRCN0000369698 GATGCCGTATGAGCCCTTAAC pLKO_005 1334 CDS 100% 10.800 15.120 N GLB1L2 n/a
5 TRCN0000164002 CCTGCATTACAGTTCACGGAA pLKO.1 2043 CDS 100% 2.640 3.696 N GLB1L2 n/a
6 TRCN0000330549 ACCAGCGCAAAGGCTTAATTG pLKO_005 1684 CDS 100% 13.200 9.240 N GLB1L2 n/a
7 TRCN0000353744 ACTACAAGACAACGAAGATTG pLKO_005 1579 CDS 100% 10.800 7.560 N GLB1L2 n/a
8 TRCN0000330550 CACCGAAGCAGTGGACCTTTA pLKO_005 689 CDS 100% 10.800 7.560 N GLB1L2 n/a
9 TRCN0000330493 GTCTCACCTGAGCTGACTTTG pLKO_005 2573 3UTR 100% 10.800 7.560 N GLB1L2 n/a
10 TRCN0000161224 GAGCTGACTTTGTTCTTCCTT pLKO.1 2582 3UTR 100% 3.000 2.100 N GLB1L2 n/a
11 TRCN0000244668 CAACCTTCTGAGCCTTCTTTG pLKO_005 2605 3UTR 100% 10.800 6.480 N GLB1L2 n/a
12 TRCN0000161754 CCACATTACCTGCTTTCTTCT pLKO.1 1822 CDS 100% 4.950 2.970 N GLB1L2 n/a
13 TRCN0000159723 GACTTTGTTCTTCCTTCACAA pLKO.1 2587 3UTR 100% 4.950 2.970 N GLB1L2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_138342.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04500 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_04500 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000468177 GCCAGAGGAGTAGCTTTAGACTGA pLX_317 22.5% 100% 100% V5 n/a
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