Transcript: Human NM_138476.4

Homo sapiens magnesium dependent phosphatase 1 (MDP1), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-07
Taxon:
Homo sapiens (human)
Gene:
MDP1 (145553)
Length:
723
CDS:
112..642

Additional Resources:

NCBI RefSeq record:
NM_138476.4
NBCI Gene record:
MDP1 (145553)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_138476.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000147797 GTACTTTGTTCATCGGGAAAT pLKO.1 375 CDS 100% 10.800 5.400 Y MDP1 n/a
2 TRCN0000146672 CTTTGTTCATCGGGAAATCTA pLKO.1 378 CDS 100% 5.625 2.813 Y MDP1 n/a
3 TRCN0000149118 GACCTCTTCAGGTACTTTGTT pLKO.1 364 CDS 100% 5.625 2.813 Y MDP1 n/a
4 TRCN0000146571 CCAGAATGGAATGAATCTTCA pLKO.1 534 CDS 100% 4.950 2.475 Y MDP1 n/a
5 TRCN0000147174 CCAGATGATCTTCTTTGATGA pLKO.1 459 CDS 100% 4.950 2.475 Y MDP1 n/a
6 TRCN0000146415 CCTCTTCAGGTACTTTGTTCA pLKO.1 366 CDS 100% 4.950 2.475 Y MDP1 n/a
7 TRCN0000149258 GCTTCAAGGACAAGTGAGATA pLKO.1 313 CDS 100% 4.950 2.475 Y MDP1 n/a
8 TRCN0000149906 GATCACACACTTTGAGAGGTT pLKO.1 411 CDS 100% 2.640 1.320 Y MDP1 n/a
9 TRCN0000148437 CTCTAAGTCAAGGGTTAGAGA pLKO.1 557 CDS 100% 0.300 0.150 Y MDP1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_138476.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04977 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_04977 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000478768 GCACCCATTTAACACCACGAGACA pLX_317 70% 100% 100% V5 n/a
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