Transcript: Human NM_138565.2

Homo sapiens cortactin (CTTN), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-29
Taxon:
Homo sapiens (human)
Gene:
CTTN (2017)
Length:
3208
CDS:
207..1748

Additional Resources:

NCBI RefSeq record:
NM_138565.2
NBCI Gene record:
CTTN (2017)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_138565.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000040275 CACGAATATCAGTCGAAACTT pLKO.1 510 CDS 100% 5.625 7.875 N CTTN n/a
2 TRCN0000298256 CACGAATATCAGTCGAAACTT pLKO_005 510 CDS 100% 5.625 7.875 N CTTN n/a
3 TRCN0000040273 CGGCAAATACGGTATCGACAA pLKO.1 794 CDS 100% 4.050 5.670 N CTTN n/a
4 TRCN0000286857 CGGCAAATACGGTATCGACAA pLKO_005 794 CDS 100% 4.050 5.670 N CTTN n/a
5 TRCN0000294182 CCACAGAATTTGCTAATATAT pLKO_005 1938 3UTR 100% 15.000 10.500 N CTTN n/a
6 TRCN0000294181 GTAACATCAGAGCTAACTTTG pLKO_005 1138 CDS 100% 10.800 7.560 N CTTN n/a
7 TRCN0000040276 GAAAGACTACTCCAGTGGTTT pLKO.1 659 CDS 100% 4.950 3.465 N CTTN n/a
8 TRCN0000040277 GAGATCTCATTTGACCCTGAT pLKO.1 1623 CDS 100% 4.050 2.835 N CTTN n/a
9 TRCN0000108890 CCTCCCAGAAAGACTACTCTA pLKO.1 652 CDS 100% 4.950 2.970 N Cttn n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_138565.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06159 pDONR223 100% 99.8% 100% None 786A>G;1347C>T n/a
2 ccsbBroad304_06159 pLX_304 0% 99.8% 100% V5 786A>G;1347C>T n/a
3 TRCN0000465868 TCGACCCCGAATAAACTTGGCATC pLX_317 26% 99.8% 100% V5 786A>G;1347C>T n/a
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