Transcript: Mouse NM_144786.2

Mus musculus gamma-glutamyltransferase 7 (Ggt7), mRNA.

Source:
NCBI, updated 2017-05-21
Taxon:
Mus musculus (mouse)
Gene:
Ggt7 (207182)
Length:
2611
CDS:
50..2038

Additional Resources:

NCBI RefSeq record:
NM_144786.2
NBCI Gene record:
Ggt7 (207182)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_144786.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000032424 CCCTGTCTATGATTCTACCAT pLKO.1 1321 CDS 100% 3.000 4.200 N Ggt7 n/a
2 TRCN0000032427 CCTACTCACCAGTGGACTATA pLKO.1 93 CDS 100% 13.200 9.240 N Ggt7 n/a
3 TRCN0000375675 CGTGATGTTGGTACATGATAT pLKO_005 613 CDS 100% 13.200 9.240 N Ggt7 n/a
4 TRCN0000366850 GGAATGAGAGCCACCTAATTG pLKO_005 639 CDS 100% 13.200 9.240 N Ggt7 n/a
5 TRCN0000376810 TCGCTGAGGTACTGGATATAC pLKO_005 978 CDS 100% 13.200 9.240 N Ggt7 n/a
6 TRCN0000366851 GACCGCTTCCTGGATACTTTC pLKO_005 905 CDS 100% 10.800 7.560 N Ggt7 n/a
7 TRCN0000375676 GGAGGACTTCAGCAACTATAG pLKO_005 1093 CDS 100% 10.800 7.560 N Ggt7 n/a
8 TRCN0000432029 CTTAGGGATGTGCTTGCAAAC pLKO_005 2312 3UTR 100% 6.000 4.200 N GGT7 n/a
9 TRCN0000032425 CGTGGAGAAGGTAGATGTCTT pLKO.1 1924 CDS 100% 4.950 3.465 N Ggt7 n/a
10 TRCN0000032428 CCCGGAATGGTGAAAGGGTTA pLKO.1 746 CDS 100% 4.050 2.835 N Ggt7 n/a
11 TRCN0000032426 CCATGATCTAGCTCATGCCTT pLKO.1 856 CDS 100% 0.264 0.185 N Ggt7 n/a
12 TRCN0000375725 GGACCTTGAGGAGTCAGATTG pLKO_005 2253 3UTR 100% 10.800 6.480 N Ggt7 n/a
13 TRCN0000418129 GAGACCCTGAAGATTGCATTA pLKO_005 1277 CDS 100% 10.800 7.560 N GGT7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_144786.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06271 pDONR223 100% 89.7% 95.7% None (many diffs) n/a
2 ccsbBroad304_06271 pLX_304 0% 89.7% 95.7% V5 (many diffs) n/a
3 TRCN0000478008 CCGTACTCACTGTCGTTAAACCCA pLX_317 11.8% 89.7% 95.7% V5 (many diffs) n/a
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