Transcript: Mouse NM_146809.2

Mus musculus olfactory receptor 1426 (Olfr1426), mRNA.

Source:
NCBI, updated 2013-04-18
Taxon:
Mus musculus (mouse)
Gene:
Olfr1426 (258805)
Length:
1727
CDS:
493..1428

Additional Resources:

NCBI RefSeq record:
NM_146809.2
NBCI Gene record:
Olfr1426 (258805)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_146809.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000030289 CAGTCATTCTTATGATGCTTA pLKO.1 1142 CDS 100% 4.950 3.465 N Olfr1426 n/a
2 TRCN0000030293 CCCACTCCATAGTGCAGATTT pLKO.1 947 CDS 100% 13.200 6.600 Y Olfr1426 n/a
3 TRCN0000186719 GCTGCTGATGATTTCCAATAA pLKO.1 1074 CDS 100% 13.200 6.600 Y Olfr1425 n/a
4 TRCN0000030290 GATGTTCTTCTTCCACCTTAT pLKO.1 786 CDS 100% 10.800 5.400 Y Olfr1426 n/a
5 TRCN0000204668 GCCTGCACAGACATCTTTGTT pLKO.1 1048 CDS 100% 5.625 2.813 Y Olfr1425 n/a
6 TRCN0000030292 CCTGACCCAAAGTCAAGAAGT pLKO.1 534 CDS 100% 4.950 2.475 Y Olfr1426 n/a
7 TRCN0000186033 CTTGATACTTTCTACTGTGAT pLKO.1 1006 CDS 100% 4.950 2.475 Y Olfr1424 n/a
8 TRCN0000189133 GAAGTGAGCATGGTGCTCTTT pLKO.1 550 CDS 100% 4.950 2.475 Y Olfr1425 n/a
9 TRCN0000030291 GAGCTGCTGATGATTTCCAAT pLKO.1 1072 CDS 100% 4.950 2.475 Y Olfr1426 n/a
10 TRCN0000204807 GTGCCCTGCATCTATGTCTAT pLKO.1 1240 CDS 100% 4.950 2.475 Y Olfr1425 n/a
11 TRCN0000188356 CCTGGTGTATGTGACAACTCT pLKO.1 582 CDS 100% 3.000 1.500 Y Olfr1425 n/a
12 TRCN0000194241 CCAAAGTCAAGAAGTGAGCAT pLKO.1 540 CDS 100% 2.640 1.320 Y Olfr1425 n/a
13 TRCN0000204301 CCCAGGTCATCAAACTTGCTT pLKO.1 1031 CDS 100% 3.000 1.500 Y Olfr1424 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_146809.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05611 pDONR223 100% 83.8% 84.6% None (many diffs) n/a
2 ccsbBroad304_05611 pLX_304 0% 83.8% 84.6% V5 (many diffs) n/a
3 TRCN0000477915 AATTGTGAGTTCGGCTCTCGCGTA pLX_317 36.8% 83.8% 84.6% V5 (many diffs) n/a
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