Transcript: Mouse NM_172403.2

Mus musculus RIKEN cDNA 2810021J22 gene (2810021J22Rik), mRNA.

Source:
NCBI, updated 2017-06-25
Taxon:
Mus musculus (mouse)
Gene:
2810021J22Rik (69944)
Length:
4966
CDS:
248..1867

Additional Resources:

NCBI RefSeq record:
NM_172403.2
NBCI Gene record:
2810021J22Rik (69944)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_172403.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000423086 TGTAACCACACTCGGCATTTA pLKO_005 1010 CDS 100% 13.200 18.480 N 2810021J22Rik n/a
2 TRCN0000086254 GCTCGACGAATGCCTTTGATA pLKO.1 903 CDS 100% 5.625 7.875 N 2810021J22Rik n/a
3 TRCN0000086256 GTAAGAAACTATTCAGCGTAA pLKO.1 1455 CDS 100% 4.050 5.670 N 2810021J22Rik n/a
4 TRCN0000425741 CGTTTCAACCAGAAGTCAAAT pLKO_005 1715 CDS 100% 13.200 9.240 N 2810021J22Rik n/a
5 TRCN0000423542 ACAGAGACTCTGAGTCTAAAG pLKO_005 2041 3UTR 100% 10.800 7.560 N 2810021J22Rik n/a
6 TRCN0000417665 AGGAGGTGTGACCTAACTATC pLKO_005 1556 CDS 100% 10.800 7.560 N 2810021J22Rik n/a
7 TRCN0000086253 CCCTTCTTGTAACCTGTGTAT pLKO.1 3638 3UTR 100% 4.950 3.465 N 2810021J22Rik n/a
8 TRCN0000086255 CCTTTGATAAGTTGGCTCTTA pLKO.1 915 CDS 100% 4.950 3.465 N 2810021J22Rik n/a
9 TRCN0000086257 CCAGACTCAACTTTGAGTGTA pLKO.1 1238 CDS 100% 0.495 0.347 N 2810021J22Rik n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_172403.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.