Transcript: Mouse NM_172525.2

Mus musculus Rho GTPase activating protein 29 (Arhgap29), mRNA.

Source:
NCBI, updated 2017-05-13
Taxon:
Mus musculus (mouse)
Gene:
Arhgap29 (214137)
Length:
5133
CDS:
112..3912

Additional Resources:

NCBI RefSeq record:
NM_172525.2
NBCI Gene record:
Arhgap29 (214137)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_172525.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000023925 CCTCGACAACAAAGTACATTT pLKO.1 3033 CDS 100% 13.200 18.480 N Arhgap29 n/a
2 TRCN0000362047 GATACTACGTCTACCTATTTC pLKO_005 588 CDS 100% 13.200 18.480 N Arhgap29 n/a
3 TRCN0000023928 GCACGATTAGTAGAGTTCCTT pLKO.1 2731 CDS 100% 3.000 4.200 N Arhgap29 n/a
4 TRCN0000023924 CCATTGAAACATTGGCATTTA pLKO.1 515 CDS 100% 13.200 10.560 N Arhgap29 n/a
5 TRCN0000361989 CCAATTCCCTCGGAGCATTTA pLKO_005 1901 CDS 100% 13.200 9.240 N Arhgap29 n/a
6 TRCN0000362045 GGATGCACTTAGTAGACATTT pLKO_005 2291 CDS 100% 13.200 9.240 N Arhgap29 n/a
7 TRCN0000362046 TTGCCAGAGACCACGACTAAA pLKO_005 3840 CDS 100% 13.200 9.240 N Arhgap29 n/a
8 TRCN0000023926 CCAGGAGACTTTCATCGGAAA pLKO.1 1795 CDS 100% 4.050 2.835 N Arhgap29 n/a
9 TRCN0000023927 GCTGTGAACTTTACAGAAGTT pLKO.1 451 CDS 100% 0.495 0.347 N Arhgap29 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_172525.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14018 pDONR223 100% 26.8% 26.8% None (many diffs) n/a
2 ccsbBroad304_14018 pLX_304 0% 26.8% 26.8% V5 (many diffs) n/a
3 TRCN0000467083 CGCCGCCAACGAATGTACATCACT pLX_317 25.6% 26.8% 26.8% V5 (many diffs) n/a
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