Transcript: Human NM_173165.3

Homo sapiens nuclear factor of activated T cells 3 (NFATC3), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-25
Taxon:
Homo sapiens (human)
Gene:
NFATC3 (4775)
Length:
6328
CDS:
313..3540

Additional Resources:

NCBI RefSeq record:
NM_173165.3
NBCI Gene record:
NFATC3 (4775)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_173165.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000014529 CGTCTCAGTTACAACCTATTA pLKO.1 3032 CDS 100% 13.200 18.480 N NFATC3 n/a
2 TRCN0000425821 CTCATCATCGAGCCCATTATG pLKO_005 1634 CDS 100% 13.200 18.480 N NFATC3 n/a
3 TRCN0000014530 GCCCAAGTATTCAAATTACAT pLKO.1 635 CDS 100% 5.625 4.500 N NFATC3 n/a
4 TRCN0000423201 GACAGCAGATGATCGATATTT pLKO_005 1761 CDS 100% 15.000 10.500 N NFATC3 n/a
5 TRCN0000423793 ATGAAGCTGCAGCCCGATTTA pLKO_005 902 CDS 100% 13.200 9.240 N NFATC3 n/a
6 TRCN0000427204 TGAAGTTCCTCCATATCATAA pLKO_005 2298 CDS 100% 13.200 9.240 N NFATC3 n/a
7 TRCN0000014528 CGAGATAATTGGGAGAGACAT pLKO.1 3423 CDS 100% 4.950 3.465 N NFATC3 n/a
8 TRCN0000097130 GCTCACATTGTCCTTGAAGTT pLKO.1 2284 CDS 100% 4.950 3.465 N Nfatc3 n/a
9 TRCN0000308439 GCTCACATTGTCCTTGAAGTT pLKO_005 2284 CDS 100% 4.950 3.465 N Nfatc3 n/a
10 TRCN0000014532 GCCAGATGATTGTGCATCCAT pLKO.1 423 CDS 100% 3.000 2.100 N NFATC3 n/a
11 TRCN0000014531 CCAGTATTGATTGTGCAGGTA pLKO.1 1910 CDS 100% 2.640 1.848 N NFATC3 n/a
12 TRCN0000422320 GTGAAGCTCCTGGGCTATAAC pLKO_005 1708 CDS 100% 13.200 7.920 N NFATC3 n/a
13 TRCN0000097133 CCAGATGATTGTGCATCCATT pLKO.1 424 CDS 100% 4.950 2.970 N Nfatc3 n/a
14 TRCN0000308440 CCAGATGATTGTGCATCCATT pLKO_005 424 CDS 100% 4.950 2.970 N Nfatc3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_173165.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01088 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_01088 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000472264 CTGGGGCATATCTTGTTACGGACC pLX_317 12.3% 100% 100% V5 n/a
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