Construct: ORF ccsbBroad304_15041
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018897.1_s304c1, BRDN0000459381
- Derived from:
- ccsbBroadEn_15041
- DNA Barcode:
- None
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- STK36 (27148)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_15041
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 27148 | STK36 | serine/threonine kinase 36 | NM_001369423.1 | 99.4% | 19.4% | (many diffs) |
| 2 | human | 27148 | STK36 | serine/threonine kinase 36 | NM_015690.5 | 99.4% | 19.4% | (many diffs) |
| 3 | human | 27148 | STK36 | serine/threonine kinase 36 | XM_011510959.2 | 98.7% | 19.6% | (many diffs) |
| 4 | human | 27148 | STK36 | serine/threonine kinase 36 | NM_001243313.2 | 97.8% | 19.7% | (many diffs) |
| 5 | human | 27148 | STK36 | serine/threonine kinase 36 | XM_017003804.2 | 97.8% | 19.7% | (many diffs) |
| 6 | human | 27148 | STK36 | serine/threonine kinase 36 | XM_011510960.1 | 95.3% | 15.3% | (many diffs) |
| 7 | human | 27148 | STK36 | serine/threonine kinase 36 | XR_922904.2 | 62.7% | (many diffs) | |
| 8 | human | 27148 | STK36 | serine/threonine kinase 36 | XM_011510961.1 | 59.3% | 7.9% | (many diffs) |
| 9 | human | 27148 | STK36 | serine/threonine kinase 36 | XM_017003805.2 | 59.3% | 7.9% | (many diffs) |
| 10 | human | 27148 | STK36 | serine/threonine kinase 36 | XR_001738704.2 | 57.8% | (many diffs) | |
| 11 | mouse | 269209 | Stk36 | serine/threonine kinase 36 | XM_006496039.1 | 85.3% | 19% | (many diffs) |
| 12 | mouse | 269209 | Stk36 | serine/threonine kinase 36 | NM_175031.3 | 85.3% | 19% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 915
- ORF length:
- 846
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat ggaaaagtac cacgtgttgg agatgattgg agaaggctct tttgggaggg 121 tgtacaaggg tcgaagaaaa tacagtgctc aggtcgtggc cctgaagttc atcccaaaat 181 tggggcgctc agagaaggag ctgaggaatt tgcaacgaga gattgaaata atgcggggtc 241 tgcggcatcc caacattgtg catatgcttg acagctttga aactgataaa gaggtggtgg 301 tggtgacaga ctatgctgag ggagagctct ttcagatcct agaagatgac ggaaaacttc 361 ctgaagacca ggttcaggcc attgctgccc agttggtgtc agccctgtac tatctgcatt 421 cccaccgcat cctacaccga gatatgaagc ctcagaacat cctcctcgcc aagggtggtg 481 gcatcaagct ctgtgacttt ggatttgccc gggctatgag caccaataca atggtgctga 541 catccatcaa aggcacacca ctctatatgt ctccagagct ggtggaggag cgaccatacg 601 accacacagc ggacctctgg tctgttggct gcatactata tgaactggca gtaggcaccc 661 ctcccttcta tgctacaagc atctttcagc tggtcagcct cattctcaag gaccctgtgc 721 gctggccctc aaccatcagt ccctgcttta agaacttcct gcaggactgc tcaccaagac 781 ccacggcagc gactgtcctg gccagacctc ttatatcacc ctttattgct ggtcatgtca 841 ccataataac tgagccagca ggcccagaat ttggggaccc cattcaccag cgctaccccc 901 agaacttcag gtcctaaagg acgaacaggc ccatcggttg gcccccaagg gtaatcagtc 961 tcgcatcttg actcaggcct ataaacgcat ggctgaggag gccatgcaga agaaacatca 1021 gaacacagga cctgcccttg agcaagagga caagaccagc aaggtggctc ctggcacagc 1081 ccctctgccc agactcgggg ccactcctca ggaatcaagc ctcctggccg ggatcttagc 1141 ctcagaattg aagagcagct gggctaaatc agggactgga gaggtgccct ctgcacctcg 1201 ggaaaaccgg accaccccag attgtgaacg agcattccca gaggagaggc cagaggtgct 1261 gggccagcgg agcactgatg tagtggacct ggaaaatgag gagccagaca gtgacaatga 1321 gtggcagcac ctgctagaga ccactgagcc tgtgcctatt caactgaagg ctcctctcac 1381 cttgctgtgt aatcctgact tctgccagcg catccagagt cagctgcatg aagctggagg 1441 gcagatcctg aatggcatct tggagggtgc ttcccacatc ctgcctgcat tccgggtcct 1501 gagcagtctt ctctccagct gcagtgattc tgttgccttg tattccttct gccgggaggc 1561 agggcttcct gggctgctgc tgagtctact caggcacagt caggagagca acagcctcca 1621 gcagcaatct tggtatggga ccttcttaca ggacctgatg gctgtgattc aggcctactt 1681 tgcctgtacc ttcaatctgg agaggagcca gacaagtgac agcctgcagg tgtttcagga 1741 ggctgccaac ctttttctgg acctgttggg gaaactgctg gcccaaccag atgactctga 1801 gcagactttg cggagggaca gccttatgtg ctttactgtc ctgtgcgaag ccatggatgg 1861 gaacagccgg gccatctcca aagcctttta ctccagcttg ctgacgacac agcaggttgt 1921 cttggatggg ctccttcatg gcttgacagt tccacagctc cctgtccaca ctccccaagg 1981 agccccgcaa gtgagccagc cactgcgaga gcagagtgag gatatacctg gagccatttc 2041 ctctgccctg gcagccatat gcactgctcc tgtgggactg cccgactgct gggatgccaa 2101 ggagcaggtc tgttggcatt tggcaaatca gctaactgaa gacagcagcc agctcaggcc 2161 atccctcatc tctggcctgc agcatcccat cctgtgcctg caccttctca aggttctata 2221 ctcctgctgc cttgtcagtg agggcctgtg ccgtcttctg gggcaggagc ccctggcctt 2281 ggaatccctg tttatgttga ttcagggcaa ggtaaaagta gtagattggg aagagtctac 2341 tgaagtgaca ctctacttcc tcacccttct tgtctttcgg ctccaaaacc tgccttgtgg 2401 aatggagaag ctaggcagtg acgttgctac tctctttacc cattcgcatg tcgtctctct 2461 tgtgagtgca gcagcctgtc tattgggaca gcttggtcag caaggggtga cctttgacct 2521 ccagcccatg gaatggatgg ctgcagccac acatgccttg tctgcccctg cagaggttcg 2581 gttgactcca ccaggtagtt gtggattcta tgatggcctc cttatccttc tgttgcagct 2641 cctcactgag caggggaagg ctagcctaat cagggatatg tccagttcag aaatgtggac 2701 cgttttgtgg caccgcttct ccatggtcct gaggctcccc gaggaggcat ctgcacagga 2761 aggggagctt tcgctatcca gtccaccaag ccctgagcca gactggacac tgatttctcc 2821 ccagggcatg gcagccctgc tgagcctggc catggccacc tttacccagg agccccagtt 2881 atgcctgagc tgcctgtccc agcatggaag tatcctcatg tccatcctga agcatctgct 2941 ttgccccagc ttcctgaatc aactgcgcca ggcgcctcat gggtctgagt ttctccctgt 3001 cgtggtgctc tctgtctgcc agctcctttg cttccccttt gcgctggaca tggatgctga 3061 cctccttata ggtgtcttgg ccgacctcag ggactcagaa gttgcagccc atctgctgca 3121 ggtctgctgc taccatcttc cgttgatgca agtggagctg cccatcagcc ttctcacacg 3181 cctggccctc atggatccca cctcttttaa accagttggt gaacacagtt ttgccttccc 3241 ctagaaccca tcgtctcgtt tctctcagtg ccctcctgag tgaccagcca ctgttgactt 3301 ccgactttct ctctctgctg ccccatactg ccagggtcct gtctcccagc cacttgtcct 3361 ttatccaaga gcttctggct ggctctgatg aatcctatcg gcccctgcgc agcctcctgg 3421 gccacccaga gaattctgtg cgggcacaca cttataggct cctgggacac ttgctccaac 3481 acagcatggc cctgcgtggg gcactgcaga gccagtctgg actgctcagc cttctgctgc 3541 ttgggcttgg agacaaggat cctgttgtgc ggtgcagtgc cagctttgct gtgggcaatg 3601 cagcctacca ggctggtcct ctgggacctg ccctggcagc tgcagtgccc agtatgaccc 3661 agctgcttgg agatcctcag gctggtatcc ggcgcaatgt tgcatcagct ctgggcaact 3721 tgggacctga aggtttggga gaggagctgt tacagtgcga agtaccccag cggctcctag 3781 aaatggcatg tggagacccc cagccaaatg tgaaggaggc tgccctcatt gccctccgga 3841 gcctgcaaca ggagcctggc atccatcagg tactggtgtc cctgggtgcc agtgagaaac 3901 tatccttgct ctctctgggg aatcagtcac tgccacacag cagtcctagg cctgcctctg 3961 ccaaacactg caggaaactc attcacctcc tgaggccagc ccatagcatg ttgccaactt 4021 tcttgtacaa agtggttggt aagcctatcc ctaaccctct cctcggtctc gattctacgt 4081 agtaatgagc tagcgctaac cggtggcgcg ttaagtcgac aatcaacctc tggatta