Transcript: Mouse NM_175512.2

Mus musculus dehydrogenase/reductase (SDR family) member 9 (Dhrs9), mRNA.

Source:
NCBI, updated 2017-05-14
Taxon:
Mus musculus (mouse)
Gene:
Dhrs9 (241452)
Length:
2817
CDS:
229..1188

Additional Resources:

NCBI RefSeq record:
NM_175512.2
NBCI Gene record:
Dhrs9 (241452)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_175512.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000041654 CAGTTGAAGATAGCAGACATT pLKO.1 289 CDS 100% 4.950 3.465 N Dhrs9 n/a
2 TRCN0000220330 CCACGCTCTAACAAGTCTCTT pLKO.1 1035 CDS 100% 4.950 3.465 N DHRS9 n/a
3 TRCN0000041653 CCCATTGAAGTTAACCTGTTT pLKO.1 625 CDS 100% 4.950 3.465 N Dhrs9 n/a
4 TRCN0000041657 GAAACTTAGCAGCCAGAACTT pLKO.1 353 CDS 100% 4.950 3.465 N Dhrs9 n/a
5 TRCN0000041655 GATCCAATCAAGACAACTGAA pLKO.1 871 CDS 100% 4.950 3.465 N Dhrs9 n/a
6 TRCN0000041656 GCCAAGACATTCTGGATACCT pLKO.1 1087 CDS 100% 3.000 2.100 N Dhrs9 n/a
7 TRCN0000218688 GGCTATACTCCATCCAAATAT pLKO_005 751 CDS 100% 15.000 12.000 N DHRS9 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_175512.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02338 pDONR223 100% 85.7% 85.8% None (many diffs) n/a
2 ccsbBroad304_02338 pLX_304 0% 85.7% 85.8% V5 (many diffs) n/a
3 TRCN0000473033 TTTTATATCTCACATAGTTCCGAT pLX_317 45.5% 85.7% 85.8% V5 (many diffs) n/a
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