Transcript: Mouse NM_176971.2

Mus musculus RAB9B, member RAS oncogene family (Rab9b), mRNA.

Source:
NCBI, updated 2017-05-13
Taxon:
Mus musculus (mouse)
Gene:
Rab9b (319642)
Length:
3761
CDS:
263..868

Additional Resources:

NCBI RefSeq record:
NM_176971.2
NBCI Gene record:
Rab9b (319642)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_176971.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000382154 AGCTCACTTATGAACCGTTAT pLKO_005 323 CDS 100% 10.800 15.120 N Rab9b n/a
2 TRCN0000048074 GTAGAGTTCTTAAATCGAGAT pLKO.1 386 CDS 100% 4.050 5.670 N RAB9B n/a
3 TRCN0000100661 CCGTTATGTAACCAACAAGTT pLKO.1 337 CDS 100% 4.950 3.960 N Rab9b n/a
4 TRCN0000100664 GTAGAGGAACAGCTGGAACAT pLKO.1 785 CDS 100% 4.950 3.960 N Rab9b n/a
5 TRCN0000232923 AGTGCCAAAGATGATACTAAT pLKO_005 722 CDS 100% 13.200 9.240 N RAB9B n/a
6 TRCN0000100660 GCCAAGTAGTTTATGTCATTT pLKO.1 1402 3UTR 100% 13.200 9.240 N Rab9b n/a
7 TRCN0000381315 TGGGTAACAAGGTAGACAAAG pLKO_005 627 CDS 100% 10.800 7.560 N Rab9b n/a
8 TRCN0000048073 CTGGGTAACAAGGTAGACAAA pLKO.1 626 CDS 100% 4.950 3.465 N RAB9B n/a
9 TRCN0000100662 GCAGATGTAAAGGACCCAGAT pLKO.1 587 CDS 100% 4.050 2.835 N Rab9b n/a
10 TRCN0000379970 ATCTACTATGCAGATGTAAAG pLKO_005 578 CDS 100% 10.800 6.480 N Rab9b n/a
11 TRCN0000100663 GAGCCTTAGAACACCATTCTA pLKO.1 472 CDS 100% 0.563 0.338 N Rab9b n/a
12 TRCN0000166364 CACACACACACACACACACAA pLKO.1 1098 3UTR 100% 4.950 2.475 Y KAAG1 n/a
13 TRCN0000178741 CACACACATACACACACACAA pLKO.1 952 3UTR 100% 4.950 2.475 Y Cstad n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_176971.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03246 pDONR223 100% 92% 98% None (many diffs) n/a
2 ccsbBroad304_03246 pLX_304 0% 92% 98% V5 (many diffs) n/a
3 TRCN0000477393 ACTATTTACATGGATTCATACAGA pLX_317 58.1% 92% 98% V5 (many diffs) n/a
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