Transcript: Human NM_178496.4

Homo sapiens Mab-21 domain containing 2 (MB21D2), mRNA.

Source:
NCBI, updated 2019-05-02
Taxon:
Homo sapiens (human)
Gene:
MB21D2 (151963)
Length:
3063
CDS:
17..1492

Additional Resources:

NCBI RefSeq record:
NM_178496.4
NBCI Gene record:
MB21D2 (151963)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_178496.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000129796 CTGGACTTAGATGAGCTTAAT pLKO.1 314 CDS 100% 13.200 18.480 N MB21D2 n/a
2 TRCN0000433028 CTTAACGATTCTATCCTATTA pLKO_005 1862 3UTR 100% 13.200 18.480 N MB21D2 n/a
3 TRCN0000436431 GAGAACCCGGGAAAGTCAATC pLKO_005 1406 CDS 100% 10.800 15.120 N MB21D2 n/a
4 TRCN0000433607 TCAATGGTGCCACCAACTACT pLKO_005 528 CDS 100% 4.950 6.930 N MB21D2 n/a
5 TRCN0000423701 GATATGGACTTTACCCTCTTG pLKO_005 359 CDS 100% 4.050 5.670 N MB21D2 n/a
6 TRCN0000147860 GTCTTTATCAATCCTGACGAT pLKO.1 1430 CDS 100% 2.640 3.696 N MB21D2 n/a
7 TRCN0000150195 GTAGTCGCATGTTGTATGATA pLKO.1 699 CDS 100% 5.625 4.500 N MB21D2 n/a
8 TRCN0000184582 GAAGACTATGCAGCCCACTTT pLKO.1 1067 CDS 100% 4.950 3.960 N Mb21d2 n/a
9 TRCN0000147735 GCCCATTTCTATCAGTGAAAT pLKO.1 2341 3UTR 100% 1.320 1.056 N MB21D2 n/a
10 TRCN0000413197 CTTTCACCACTACTGATATTT pLKO_005 1919 3UTR 100% 15.000 10.500 N MB21D2 n/a
11 TRCN0000417806 TGCAAAGCCATCATCATTAAA pLKO_005 953 CDS 100% 15.000 10.500 N MB21D2 n/a
12 TRCN0000427209 GCTTCCAGTGGCTAATGAATA pLKO_005 253 CDS 100% 13.200 9.240 N MB21D2 n/a
13 TRCN0000422613 ACAAGGGTAAGAAGGACAATG pLKO_005 852 CDS 100% 10.800 7.560 N MB21D2 n/a
14 TRCN0000148415 CCTGGACTTAGATGAGCTTAA pLKO.1 313 CDS 100% 10.800 7.560 N MB21D2 n/a
15 TRCN0000422236 CATCGATGACCTGCAACACTG pLKO_005 1099 CDS 100% 4.050 2.835 N MB21D2 n/a
16 TRCN0000147391 GCTCTTTAGTTTGTTGGAGTT pLKO.1 1717 3UTR 100% 4.050 2.835 N MB21D2 n/a
17 TRCN0000148911 CCTGTGGTATCTTTCAAAGGT pLKO.1 725 CDS 100% 3.000 2.100 N MB21D2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_178496.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05059 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_05059 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000476023 AAGCTCTACACTTCCGCTACTCGA pLX_317 18.1% 100% 100% V5 n/a
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