Transcript: Human NM_178563.4

Homo sapiens ATP/GTP binding protein like 3 (AGBL3), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-05-02
Taxon:
Homo sapiens (human)
Gene:
AGBL3 (340351)
Length:
3533
CDS:
254..3016

Additional Resources:

NCBI RefSeq record:
NM_178563.4
NBCI Gene record:
AGBL3 (340351)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_178563.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000305105 ACGGGATTTAAACCGTAATTA pLKO_005 1510 CDS 100% 15.000 21.000 N Agbl3 n/a
2 TRCN0000422747 GACGGGATTTAAACCGTAATT pLKO_005 1509 CDS 100% 13.200 18.480 N AGBL3 n/a
3 TRCN0000073897 CCTGTGGATTACCGTGACAAT pLKO.1 734 CDS 100% 4.950 6.930 N AGBL3 n/a
4 TRCN0000073894 CCCGGACTACACAGATACTAT pLKO.1 405 CDS 100% 5.625 4.500 N AGBL3 n/a
5 TRCN0000428865 GATGGACAACCCACCTTATAT pLKO_005 2972 CDS 100% 15.000 10.500 N AGBL3 n/a
6 TRCN0000073895 GCAACGAATCTTCCCACTTAT pLKO.1 1708 CDS 100% 13.200 9.240 N AGBL3 n/a
7 TRCN0000031420 GCAAGGTTTGAGAGTGGTAAT pLKO.1 770 CDS 100% 10.800 7.560 N Agbl3 n/a
8 TRCN0000073896 CGTGACAATACTTTGATGTTT pLKO.1 746 CDS 100% 5.625 3.938 N AGBL3 n/a
9 TRCN0000073893 CCAGATGATTATATGGTTGAT pLKO.1 2309 CDS 100% 4.950 3.465 N AGBL3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_178563.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13597 pDONR223 100% 67.1% 66.9% None (many diffs) n/a
2 ccsbBroad304_13597 pLX_304 0% 67.1% 66.9% V5 (many diffs) n/a
3 TRCN0000465400 CCCAGAGACAACCCGCAAACTTCG pLX_317 21.8% 67.1% 66.9% V5 (many diffs) n/a
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