Construct: ORF TRCN0000465400

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002851.1_s317c1
Derived from:
ccsbBroadEn_13597
DNA Barcode:
CCCAGAGACAACCCGCAAACTTCG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
AGBL3 (340351)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000465400
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 340351 AGBL3 ATP/GTP binding protein like 3 XM_017012143.2 87.7% 87.5% (many diffs)
2 human 340351 AGBL3 ATP/GTP binding protein like 3 XM_011516122.3 80.5% 80.5% (many diffs)
3 human 340351 AGBL3 ATP/GTP binding protein like 3 XM_017012142.2 72.6% 72.3% (many diffs)
4 human 340351 AGBL3 ATP/GTP binding protein like 3 XM_017012140.2 71.9% 71.7% (many diffs)
5 human 340351 AGBL3 ATP/GTP binding protein like 3 XM_017012139.2 69.1% 67.7% (many diffs)
6 human 340351 AGBL3 ATP/GTP binding protein like 3 XM_017012138.2 67.2% 67% (many diffs)
7 human 340351 AGBL3 ATP/GTP binding protein like 3 NM_178563.4 67.1% 66.9% (many diffs)
8 human 340351 AGBL3 ATP/GTP binding protein like 3 XM_017012136.2 67.1% 66.9% (many diffs)
9 human 340351 AGBL3 ATP/GTP binding protein like 3 XM_017012137.2 67.1% 66.9% (many diffs)
10 human 340351 AGBL3 ATP/GTP binding protein like 3 NR_160300.1 62.4% (many diffs)
11 human 340351 AGBL3 ATP/GTP binding protein like 3 XM_017012141.2 60.4% 60.2% (many diffs)
12 human 340351 AGBL3 ATP/GTP binding protein like 3 XR_001744698.2 54.4% (many diffs)
13 human 340351 AGBL3 ATP/GTP binding protein like 3 XR_001744697.2 54.2% (many diffs)
14 human 340351 AGBL3 ATP/GTP binding protein like 3 XR_001744696.2 46.7% (many diffs)
15 human 340351 AGBL3 ATP/GTP binding protein like 3 XR_001744699.2 38.9% (many diffs)
16 human 340351 AGBL3 ATP/GTP binding protein like 3 NM_001367812.1 23.4% 18.1% (many diffs)
17 human 340351 AGBL3 ATP/GTP binding protein like 3 NM_001367813.1 23.4% 18.1% (many diffs)
18 human 340351 AGBL3 ATP/GTP binding protein like 3 NM_001367816.1 17.4% 16.4% (many diffs)
19 human 340351 AGBL3 ATP/GTP binding protein like 3 NM_001367817.1 17.4% 16.4% (many diffs)
20 human 340351 AGBL3 ATP/GTP binding protein like 3 NM_001367818.1 17.4% 16.4% (many diffs)
21 human 340351 AGBL3 ATP/GTP binding protein like 3 NM_001345852.1 15.9% 13.2% (many diffs)
22 human 340351 AGBL3 ATP/GTP binding protein like 3 NM_001345853.1 15.9% 13.2% (many diffs)
23 human 340351 AGBL3 ATP/GTP binding protein like 3 XM_024446750.1 15.9% 13.2% (many diffs)
24 human 340351 AGBL3 ATP/GTP binding protein like 3 NM_001367814.1 15.8% 13.3% (many diffs)
25 mouse 76223 Agbl3 ATP/GTP binding protein-like 3 XM_006506734.3 83.9% 84.7% (many diffs)
26 mouse 76223 Agbl3 ATP/GTP binding protein-like 3 XR_377501.3 61.5% (many diffs)
27 mouse 76223 Agbl3 ATP/GTP binding protein-like 3 NM_178630.4 54% 54.1% (many diffs)
28 mouse 76223 Agbl3 ATP/GTP binding protein-like 3 NM_001289656.1 53.7% 53.9% (many diffs)
29 mouse 76223 Agbl3 ATP/GTP binding protein-like 3 XM_006506731.3 52.8% 52.8% (many diffs)
30 mouse 76223 Agbl3 ATP/GTP binding protein-like 3 XR_377500.3 34.8% (many diffs)
31 mouse 76223 Agbl3 ATP/GTP binding protein-like 3 NM_001289657.1 33.2% 33.7% (many diffs)
32 mouse 76223 Agbl3 ATP/GTP binding protein-like 3 XM_011241501.1 33.2% 33.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1929
ORF length:
1863
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtc agaagattca gaaaaggaag actattcaga cagaacaatc agtgatgaag
121atgaatcgga tgaggatatg ttcatgaaat ttgtaagtga agatcttcat cggtgtgcac
181ttttaacagc tgactctttt ggtgatccct tcttcccccg gactacacag atactattag
241aatatcagct agggagatgg gtgccacgtc ttcgtgaacc aagggattta tatggtgtct
301cttcttctgg tccattgagc ccaacacggt ggccatacca ttgtgaagtc atcgatgaaa
361aagtccagca tattgattgg actccttctt gtcctgagcc agtgtatatc ccaacgggct
421tagaaacgca acccctttat ccagactcca aggaagctac tgtggtttat ctagctgaag
481atgcttacaa agagccctgt tttgtgtatt cccgagttgg gggtaaccga acacctttga
541agcagcctgt ggattaccgt gacaatactt tgatgtttga agcaaggttt gagagtggta
601atctacagaa ggtagtcaaa gtggcagaat acgaatacca attgactgta cgccctgacc
661tcttcacaaa taaacacacc cagtggtact atttccaagt cactaatatg cgagcaggaa
721tagtctacag attcactatt gtcaacttca ccaaacctgc tagtctttac agtcggggta
781tgcgcccact gttctattct gaaaaagagg ccaaggctca tcacattggc tggcagagaa
841taggagacca aatcaagtat tataggaaca acccaggcca agatgggcgc cattatttct
901ctcttacatg gacatttcaa tttccacaca acaaagatac ctgctacttt gctcattgct
961atccatacac ttacaccaac ctgcaagaat acctttctgg catcaataat gatccagtac
1021ggtcaaagtt ttgtaaaata cgtgttttgt gccacacgct tgctaggaac atggtgtata
1081ttttaacaat cactaccccc ttgaagaact ctgactcaag aaagcggaag gctgtgattc
1141tgactgcaag ggtccatcca ggggaaacca acagctcttg gatcatgaaa ggcttcctag
1201attatatttt aggaaactca agtgatgcac agttgcttcg ggacactttt gtcttcaagg
1261tggtacccat gctgaatcca gatggtgtga ttgtgggaaa ttatcgctgt tccttagctg
1321gacgggattt aaaccgtaat tatacatctc tcctgaagga atcttttcct tctgtatggt
1381atacccggaa catggttcat agactgatgg agaaacgaga ggttatatta tactgtgatc
1441ttcatggcca tagtaggaaa gagaacatct tcatgtatgg ctgtgatggt agtgacagat
1501ctaagacatt atacttacag caacgaaTCT TCCCACTTAT GCTAAGCAAA AATTGTCCAG
1561ATAAATTTTC ATTCTCAGCT TGCAAGTTTA ATGTCCAGAA GAGCAAAGAA GGAACAGGAA
1621GGGTGGTAAT GTGGAAAATG GGAATCAGGA ACAGCTTTAC CATGGAGGCC ACCTTCTGTG
1681GATCTACTCT GGGTAACAAA CGAGGCACTC ATTTCAGCAC GAAAGACCTG GAATCAATGG
1741GATATCATTT TTGTGATTCT CTCTTGGATT ATTGTGATCC CGACCGGACC AAGTATTATC
1801GGTGCCTGAA AGAATTAGAA GAAATGGAAA GACATATAAC CCTGGAAAAA GTCTTTGAGG
1861ATTCAGACAC ACCTGTGATA GACATTACAT TGGATGTAGA GTCTAGAGAA CTGACATTTT
1921TATTGAGATG CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
1981CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
2041TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGACCCAGA GACAACCCGC AAACTTCGAC
2101GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)

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