Transcript: Mouse NM_178775.4

Mus musculus ribosomal protein S6 kinase polypeptide 1 (Rps6kc1), mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Rps6kc1 (320119)
Length:
4034
CDS:
111..3281

Additional Resources:

NCBI RefSeq record:
NM_178775.4
NBCI Gene record:
Rps6kc1 (320119)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_178775.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000078901 CCGTCCCAGTTATCTCATTTA pLKO.1 2092 CDS 100% 13.200 18.480 N Rps6kc1 n/a
2 TRCN0000302403 CCGTCCCAGTTATCTCATTTA pLKO_005 2092 CDS 100% 13.200 18.480 N Rps6kc1 n/a
3 TRCN0000304694 TTCGACACTCTGAGCTATTTC pLKO_005 325 CDS 100% 13.200 18.480 N Rps6kc1 n/a
4 TRCN0000304749 CTGTTCACAGAACCGACTAAA pLKO_005 2625 CDS 100% 13.200 9.240 N Rps6kc1 n/a
5 TRCN0000078899 GCACAGAGAATTATGGCAAAT pLKO.1 290 CDS 100% 10.800 7.560 N Rps6kc1 n/a
6 TRCN0000302402 GCACAGAGAATTATGGCAAAT pLKO_005 290 CDS 100% 10.800 7.560 N Rps6kc1 n/a
7 TRCN0000078900 GCAACGAGTATGGGCAAGAAA pLKO.1 1654 CDS 100% 5.625 3.375 N Rps6kc1 n/a
8 TRCN0000078902 GCCCTCTTTACCCTTGAAGAT pLKO.1 1983 CDS 100% 4.950 2.970 N Rps6kc1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_178775.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.