Transcript: Human NM_184087.2

Homo sapiens tripartite motif containing 55 (TRIM55), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-08-03
Taxon:
Homo sapiens (human)
Gene:
TRIM55 (84675)
Length:
1758
CDS:
141..866

Additional Resources:

NCBI RefSeq record:
NM_184087.2
NBCI Gene record:
TRIM55 (84675)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_184087.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000416802 GTCACTAACAAGTGGCAAATG pLKO_005 1157 3UTR 100% 10.800 7.560 N TRIM55 n/a
2 TRCN0000034011 CAGCACAACCTGTGTAGGAAA pLKO.1 267 CDS 100% 4.950 3.465 N TRIM55 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_184087.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04413 pDONR223 100% 53.3% 53.3% None 601_602ins633 n/a
2 ccsbBroad304_04413 pLX_304 0% 53.3% 53.3% V5 601_602ins633 n/a
3 TRCN0000473514 CAGTGGGAGGCAACCACGCAGACC pLX_317 36.4% 53.3% 53.3% V5 601_602ins633 n/a
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