Construct: ORF ccsbBroadEn_04413
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000015.1_s300c1, BRDN0000386379
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TRIM55 (84675)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84675 | TRIM55 | tripartite motif containing 55 | NM_184086.2 | 100% | 100% | |
| 2 | human | 84675 | TRIM55 | tripartite motif containing 55 | XM_011517616.2 | 100% | 100% | |
| 3 | human | 84675 | TRIM55 | tripartite motif containing 55 | XM_024447308.1 | 99.7% | 99.7% | 983_984insAGA |
| 4 | human | 84675 | TRIM55 | tripartite motif containing 55 | NM_184085.2 | 82.4% | 82.4% | 1234_1521del |
| 5 | human | 84675 | TRIM55 | tripartite motif containing 55 | XM_011517613.2 | 82.4% | 82.4% | 1234_1521del |
| 6 | human | 84675 | TRIM55 | tripartite motif containing 55 | XM_011517614.2 | 82.4% | 82.4% | 1234_1521del |
| 7 | human | 84675 | TRIM55 | tripartite motif containing 55 | XM_005251316.4 | 82.2% | 82.2% | 983_984insAGA;1231_1518del |
| 8 | human | 84675 | TRIM55 | tripartite motif containing 55 | NM_033058.3 | 81.9% | 77.8% | (many diffs) |
| 9 | human | 84675 | TRIM55 | tripartite motif containing 55 | XM_011517615.2 | 81.9% | 77.8% | (many diffs) |
| 10 | human | 84675 | TRIM55 | tripartite motif containing 55 | XM_024447309.1 | 73% | 73% | 0_1ins366 |
| 11 | human | 84675 | TRIM55 | tripartite motif containing 55 | XM_024447310.1 | 72.7% | 72.7% | 0_1ins366;617_618insAGA |
| 12 | human | 84675 | TRIM55 | tripartite motif containing 55 | XM_017013908.1 | 69.8% | 69.8% | 0_1ins207;1027_1314del |
| 13 | human | 84675 | TRIM55 | tripartite motif containing 55 | XM_011517617.2 | 60.2% | 60.2% | 0_1ins366;868_1155del |
| 14 | human | 84675 | TRIM55 | tripartite motif containing 55 | XM_017013909.1 | 60.2% | 60.2% | 0_1ins366;868_1155del |
| 15 | human | 84675 | TRIM55 | tripartite motif containing 55 | NM_184087.2 | 53.3% | 53.3% | 601_602ins633 |
| 16 | mouse | 381485 | Trim55 | tripartite motif-containing 55 | XM_006535490.3 | 84.7% | 86.5% | (many diffs) |
| 17 | mouse | 381485 | Trim55 | tripartite motif-containing 55 | XM_006535491.3 | 79.6% | 74.6% | (many diffs) |
| 18 | mouse | 381485 | Trim55 | tripartite motif-containing 55 | NM_001081281.1 | 69.9% | 71.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1422
- ORF length:
- 1356
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG CGCATCTCTG AATTACAAAT CTTTTTCCAA AGAGCAGCAG ACCATGGATA 121 ACTTAGAGAA GCAACTCATC TGTCCCATCT GCTTAGAGAT GTTCACGAAA CCTGTGGTGA 181 TTCTCCCTTG TCAGCACAAC CTGTGTAGGA AATGTGCCAG TGATATTTTC CAGGCCTCTA 241 ACCCGTATTT GCCCACAAGA GGAGGTACCA CCATGGCATC AGGGGGCCGA TTCCGCTGCC 301 CATCCTGTAG ACATGAAGTG GTTTTGGATA GACATGGGGT ATATGGACTT CAGAGGAACC 361 TGCTGGTGGA AAATATCATT GACATCTACA AGCAGGAGTC CACCAGGCCA GAAAAGAAAT 421 CCGACCAGCC CATGTGCGAG GAACATGAAG AGGAGCGCAT CAACATCTAC TGTCTGAACT 481 GCGAAGTACC CACCTGCTCT CTGTGCAAGG TGTTTGGTGC ACACAAAGAC TGCCAGGTGG 541 CTCCCCTCAC TCATGTGTTC CAGAGACAGA AGTCTGAGCT CAGTGATGGC ATCGCCATCC 601 TCGTGGGCAG CAACGATCGA GTCCAGGGAG TGATCAGCCA GCTGGAAGAC ACCTGCAAAA 661 CTATCGAGGA ATGTTGCAGA AAACAGAAAC AAGAGCTTTG TGAGAAGTTT GATTACCTGT 721 ATGGCATTTT GGAGGAGAGG AAGAATGAAA TGACCCAAGT CATTACCCGA ACCCAAGAGG 781 AGAAACTGGA ACATGTCCGT GCTCTGATCA AAAAGTATTC TGATCATTTG GAGAACGTCT 841 CAAAGTTGGT TGAGTCAGGA ATTCAGTTTA TGGATGAGCC AGAAATGGCA GTGTTTCTGC 901 AGAATGCCAA AACCCTGCTA AAAAAAATCT CGGAAGCATC AAAGGCATTT CAGATGGAGA 961 AAATAGAACA TGGCTATGAG AACATGAACC ACTTCACAGT CAACCTCAAT AGAGAAGAAA 1021 AGATAATACG TGAAATTGAC TTTTACAGAG AAGATGAAGA TGAAGAAGAA GAAGAAGGCG 1081 GAGAAGGAGA AAAAGAAGGA GAAGGAGAAG TGGGAGGAGA AGCAGTAGAA GTGGAAGAGG 1141 TAGAAAATGT TCAAACAGAG TTTCCAGGAG AAGATGAAAA CCCAGAAAAA GCTTCAGAGC 1201 TCTCTCAGGT GGAGCTGCAG GCTGCCCCTG GGGCACTTCC AGTTTCCTCT CCAGAGCCAC 1261 CTCCAGCCCT GCCACCTGCT GCGGATGCCC CTGTGACACA GATTGGATTT GAGGCTCCTC 1321 CCCTCCAGGG ACAGGCTGCA GCTCCAGCGA GTGGCAGTGG AGCTGATTCT GAGCCAGCTC 1381 GCCATATCTT CTCCTTTTCC TGGTTGAACT CCCTAAATGA ATGCCCAACT TTCTTGTACA 1441 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac