Construct: ORF ccsbBroadEn_04413

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000015.1_s300c1, BRDN0000386379
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TRIM55 (84675)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84675 TRIM55 tripartite motif containing 55 NM_184086.2 100% 100%
2 human 84675 TRIM55 tripartite motif containing 55 XM_011517616.2 100% 100%
3 human 84675 TRIM55 tripartite motif containing 55 XM_024447308.1 99.7% 99.7% 983_984insAGA
4 human 84675 TRIM55 tripartite motif containing 55 NM_184085.2 82.4% 82.4% 1234_1521del
5 human 84675 TRIM55 tripartite motif containing 55 XM_011517613.2 82.4% 82.4% 1234_1521del
6 human 84675 TRIM55 tripartite motif containing 55 XM_011517614.2 82.4% 82.4% 1234_1521del
7 human 84675 TRIM55 tripartite motif containing 55 XM_005251316.4 82.2% 82.2% 983_984insAGA;1231_1518del
8 human 84675 TRIM55 tripartite motif containing 55 NM_033058.3 81.9% 77.8% (many diffs)
9 human 84675 TRIM55 tripartite motif containing 55 XM_011517615.2 81.9% 77.8% (many diffs)
10 human 84675 TRIM55 tripartite motif containing 55 XM_024447309.1 73% 73% 0_1ins366
11 human 84675 TRIM55 tripartite motif containing 55 XM_024447310.1 72.7% 72.7% 0_1ins366;617_618insAGA
12 human 84675 TRIM55 tripartite motif containing 55 XM_017013908.1 69.8% 69.8% 0_1ins207;1027_1314del
13 human 84675 TRIM55 tripartite motif containing 55 XM_011517617.2 60.2% 60.2% 0_1ins366;868_1155del
14 human 84675 TRIM55 tripartite motif containing 55 XM_017013909.1 60.2% 60.2% 0_1ins366;868_1155del
15 human 84675 TRIM55 tripartite motif containing 55 NM_184087.2 53.3% 53.3% 601_602ins633
16 mouse 381485 Trim55 tripartite motif-containing 55 XM_006535490.3 84.7% 86.5% (many diffs)
17 mouse 381485 Trim55 tripartite motif-containing 55 XM_006535491.3 79.6% 74.6% (many diffs)
18 mouse 381485 Trim55 tripartite motif-containing 55 NM_001081281.1 69.9% 71.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1422
ORF length:
1356
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG CGCATCTCTG AATTACAAAT CTTTTTCCAA AGAGCAGCAG ACCATGGATA
121ACTTAGAGAA GCAACTCATC TGTCCCATCT GCTTAGAGAT GTTCACGAAA CCTGTGGTGA
181TTCTCCCTTG TCAGCACAAC CTGTGTAGGA AATGTGCCAG TGATATTTTC CAGGCCTCTA
241ACCCGTATTT GCCCACAAGA GGAGGTACCA CCATGGCATC AGGGGGCCGA TTCCGCTGCC
301CATCCTGTAG ACATGAAGTG GTTTTGGATA GACATGGGGT ATATGGACTT CAGAGGAACC
361TGCTGGTGGA AAATATCATT GACATCTACA AGCAGGAGTC CACCAGGCCA GAAAAGAAAT
421CCGACCAGCC CATGTGCGAG GAACATGAAG AGGAGCGCAT CAACATCTAC TGTCTGAACT
481GCGAAGTACC CACCTGCTCT CTGTGCAAGG TGTTTGGTGC ACACAAAGAC TGCCAGGTGG
541CTCCCCTCAC TCATGTGTTC CAGAGACAGA AGTCTGAGCT CAGTGATGGC ATCGCCATCC
601TCGTGGGCAG CAACGATCGA GTCCAGGGAG TGATCAGCCA GCTGGAAGAC ACCTGCAAAA
661CTATCGAGGA ATGTTGCAGA AAACAGAAAC AAGAGCTTTG TGAGAAGTTT GATTACCTGT
721ATGGCATTTT GGAGGAGAGG AAGAATGAAA TGACCCAAGT CATTACCCGA ACCCAAGAGG
781AGAAACTGGA ACATGTCCGT GCTCTGATCA AAAAGTATTC TGATCATTTG GAGAACGTCT
841CAAAGTTGGT TGAGTCAGGA ATTCAGTTTA TGGATGAGCC AGAAATGGCA GTGTTTCTGC
901AGAATGCCAA AACCCTGCTA AAAAAAATCT CGGAAGCATC AAAGGCATTT CAGATGGAGA
961AAATAGAACA TGGCTATGAG AACATGAACC ACTTCACAGT CAACCTCAAT AGAGAAGAAA
1021AGATAATACG TGAAATTGAC TTTTACAGAG AAGATGAAGA TGAAGAAGAA GAAGAAGGCG
1081GAGAAGGAGA AAAAGAAGGA GAAGGAGAAG TGGGAGGAGA AGCAGTAGAA GTGGAAGAGG
1141TAGAAAATGT TCAAACAGAG TTTCCAGGAG AAGATGAAAA CCCAGAAAAA GCTTCAGAGC
1201TCTCTCAGGT GGAGCTGCAG GCTGCCCCTG GGGCACTTCC AGTTTCCTCT CCAGAGCCAC
1261CTCCAGCCCT GCCACCTGCT GCGGATGCCC CTGTGACACA GATTGGATTT GAGGCTCCTC
1321CCCTCCAGGG ACAGGCTGCA GCTCCAGCGA GTGGCAGTGG AGCTGATTCT GAGCCAGCTC
1381GCCATATCTT CTCCTTTTCC TGGTTGAACT CCCTAAATGA ATGCCCAACT TTCTTGTACA
1441AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)

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