Transcript: Human NM_198395.2

Homo sapiens G3BP stress granule assembly factor 1 (G3BP1), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-07-07
Taxon:
Homo sapiens (human)
Gene:
G3BP1 (10146)
Length:
10196
CDS:
102..1502

Additional Resources:

NCBI RefSeq record:
NM_198395.2
NBCI Gene record:
G3BP1 (10146)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_198395.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000426278 GAAGGCGACCGACGAGATAAT pLKO_005 1359 CDS 100% 13.200 18.480 N G3BP1 n/a
2 TRCN0000008722 CGCATTAACAGTGGTGGGAAA pLKO.1 1209 CDS 100% 4.050 5.670 N G3BP1 n/a
3 TRCN0000412539 GATGCTCATGCCACGCTAAAT pLKO_005 342 CDS 100% 13.200 10.560 N G3BP1 n/a
4 TRCN0000008720 CGGGAATTTGTGAGACAGTAT pLKO.1 138 CDS 100% 4.950 3.960 N G3BP1 n/a
5 TRCN0000414879 AGTGCGAGAACAACGAATAAA pLKO_005 1007 CDS 100% 15.000 10.500 N G3BP1 n/a
6 TRCN0000427929 TTAGTCTTTCACTTCCAATTT pLKO_005 1687 3UTR 100% 13.200 9.240 N G3BP1 n/a
7 TRCN0000420339 GATACCAAGATGAGGTCTTTG pLKO_005 496 CDS 100% 10.800 7.560 N G3BP1 n/a
8 TRCN0000008721 CCACCTCATGTTGTTAAAGTA pLKO.1 912 CDS 100% 5.625 3.938 N G3BP1 n/a
9 TRCN0000008723 CCAGGCTTTGAGGAGATTCAT pLKO.1 407 CDS 100% 5.625 3.938 N G3BP1 n/a
10 TRCN0000008719 GCCTGTAAGAAATACAGGATT pLKO.1 1906 3UTR 100% 0.495 0.347 N G3BP1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_198395.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02330 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_02330 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000470072 TAGACTACAACTTGTACGTGCAAT pLX_317 19.5% 100% 100% V5 n/a
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