Transcript: Human NM_198544.4

Homo sapiens CENPS-CORT readthrough (CENPS-CORT), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-06-02
Taxon:
Homo sapiens (human)
Gene:
CENPS-CORT (100526739)
Length:
1138
CDS:
86..580

Additional Resources:

NCBI RefSeq record:
NM_198544.4
NBCI Gene record:
CENPS-CORT (100526739)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_198544.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000262597 AGCTAAAGGCTACACAATTAA pLKO_005 871 3UTR 100% 15.000 7.500 Y CENPS n/a
2 TRCN0000262596 CTTAGCCAGGAGGAGTAATTC pLKO_005 337 CDS 100% 13.200 6.600 Y CENPS n/a
3 TRCN0000282342 ACAGACCATTGCGGCCATTTC pLKO_005 217 CDS 100% 10.800 5.400 Y CENPS n/a
4 TRCN0000038878 AGACCTTCTCCTCCTGCAAAT pLKO.1 558 CDS 100% 10.800 5.400 Y CORT n/a
5 TRCN0000262599 TCTTACCAACAGAGGCTAAAG pLKO_005 125 CDS 100% 10.800 5.400 Y CENPS n/a
6 TRCN0000262598 TTTGCCAAAGACCTTGAAATG pLKO_005 266 CDS 100% 10.800 5.400 Y CENPS n/a
7 TRCN0000191787 GCCAAAGACCTTGAAATGTTT pLKO.1 269 CDS 100% 5.625 2.813 Y Apitd1 n/a
8 TRCN0000038874 GCCTCCTGACTTTCCTCGCTT pLKO.1 396 CDS 100% 0.880 0.440 Y CORT n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_198544.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05554 pDONR223 100% 67.6% 60.6% None (many diffs) n/a
2 ccsbBroad304_05554 pLX_304 0% 67.6% 60.6% V5 (many diffs) n/a
3 TRCN0000475458 CCATTGACATCAGCTAAAAATATA pLX_317 51.8% 67.6% 60.6% V5 (many diffs) n/a
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