Transcript: Human NM_201441.3

Homo sapiens TEA domain transcription factor 4 (TEAD4), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-10
Taxon:
Homo sapiens (human)
Gene:
TEAD4 (7004)
Length:
1581
CDS:
208..1383

Additional Resources:

NCBI RefSeq record:
NM_201441.3
NBCI Gene record:
TEAD4 (7004)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_201441.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000015874 CCCGGATATTGAGCAGAGTTT pLKO.1 339 CDS 100% 4.950 6.930 N TEAD4 n/a
2 TRCN0000274223 CGAGATCCAGGCCAAGCTAAA pLKO_005 540 CDS 100% 10.800 8.640 N TEAD4 n/a
3 TRCN0000274171 TGGACAAGCCCATCGACAATG pLKO_005 299 CDS 100% 10.800 7.560 N TEAD4 n/a
4 TRCN0000015876 CCTTTCTCTCAGCAAACCTAT pLKO.1 613 CDS 100% 4.950 3.465 N TEAD4 n/a
5 TRCN0000285158 CCTTTCTCTCAGCAAACCTAT pLKO_005 613 CDS 100% 4.950 3.465 N TEAD4 n/a
6 TRCN0000015877 GCTGTGCATTGCCTATGTCTT pLKO.1 1302 CDS 100% 4.950 3.465 N TEAD4 n/a
7 TRCN0000285155 GCTGTGCATTGCCTATGTCTT pLKO_005 1302 CDS 100% 4.950 3.465 N TEAD4 n/a
8 TRCN0000015875 GAGACAGAGTATGCTCGCTAT pLKO.1 1114 CDS 100% 4.050 2.835 N TEAD4 n/a
9 TRCN0000285156 GAGACAGAGTATGCTCGCTAT pLKO_005 1114 CDS 100% 4.050 2.835 N TEAD4 n/a
10 TRCN0000015873 GAAGAGACGTGTGTGCAGGAA pLKO.1 1408 3UTR 100% 2.640 1.848 N TEAD4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_201441.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07045 pDONR223 100% 73.2% 73.2% None 1_219del;353_354ins129 n/a
2 ccsbBroad304_07045 pLX_304 0% 73.2% 73.2% V5 1_219del;353_354ins129 n/a
3 TRCN0000467876 AGTCAGAACTTTTGAAATTTTATT pLX_317 29.2% 73.2% 73.2% V5 1_219del;353_354ins129 n/a
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