Transcript: Mouse NM_206868.1

Mus musculus vomeronasal 1 receptor 178 (Vmn1r178), mRNA.

Source:
NCBI, updated 2015-08-05
Taxon:
Mus musculus (mouse)
Gene:
Vmn1r178 (232959)
Length:
915
CDS:
1..915

Additional Resources:

NCBI RefSeq record:
NM_206868.1
NBCI Gene record:
Vmn1r178 (232959)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_206868.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000193670 CCTCACTTCATTTCCAGACAT pLKO.1 201 CDS 100% 4.950 3.465 N Vmn1r178 n/a
2 TRCN0000194632 GACTCTTCAAATCCTCCTGCT pLKO.1 42 CDS 100% 2.160 1.512 N Vmn1r178 n/a
3 TRCN0000216308 GTTAATAGAGGTAAAGCTATA pLKO.1 358 CDS 100% 10.800 6.480 N Vmn1r178 n/a
4 TRCN0000174287 CTTGACGAGTTATTCTTGTTA pLKO.1 399 CDS 100% 5.625 3.375 N Vmn1r178 n/a
5 TRCN0000174920 GACAATAACACTGACTCTAAA pLKO.1 490 CDS 100% 13.200 6.600 Y Vmn1r148 n/a
6 TRCN0000126886 GTCACTCTTGTTCCTGTTAAT pLKO.1 343 CDS 100% 13.200 6.600 Y Vmn1r180 n/a
7 TRCN0000272281 ACCAGAGCAACCCATACTATC pLKO_005 697 CDS 100% 10.800 5.400 Y Vmn1r132 n/a
8 TRCN0000425110 CAGTCTTGACTGGTTCTAAAC pLKO_005 122 CDS 100% 10.800 5.400 Y Vmn1r148 n/a
9 TRCN0000174845 GTTCCTGTTAATAGAGGTAAA pLKO.1 352 CDS 100% 10.800 5.400 Y Vmn1r148 n/a
10 TRCN0000272283 TTCCTGTTAATAGAGGTAAAG pLKO_005 353 CDS 100% 10.800 5.400 Y Vmn1r132 n/a
11 TRCN0000188142 CCATCAGTTTGTCACTCTTGT pLKO.1 333 CDS 100% 4.950 2.475 Y Vmn1r159 n/a
12 TRCN0000194119 GTACTTCTCCTCCATAGACAT pLKO.1 619 CDS 100% 4.950 2.475 Y V1rd19 n/a
13 TRCN0000126502 GTCCTGAGTATCCATCAGTTT pLKO.1 322 CDS 100% 4.950 2.475 Y Vmn1r183 n/a
14 TRCN0000175710 GTCCTGAGTATCCATCAGTTT pLKO.1 322 CDS 100% 4.950 2.475 Y Vmn1r178 n/a
15 TRCN0000126501 GTGGTCACATTTGTTAGCTTT pLKO.1 727 CDS 100% 4.950 2.475 Y Vmn1r183 n/a
16 TRCN0000193465 GTGGTCACATTTGTTAGCTTT pLKO.1 727 CDS 100% 4.950 2.475 Y Vmn1r178 n/a
17 TRCN0000193932 CCAGTCTTGACTGGTTCTAAA pLKO.1 121 CDS 100% 1.320 0.660 Y Vmn1r178 n/a
18 TRCN0000176021 GTTGATCTTCAGAGATCCTAA pLKO.1 864 CDS 100% 0.495 0.248 Y Vmn1r148 n/a
19 TRCN0000414282 TCAGAGCAAGTGTCCCAAATT pLKO_005 380 CDS 100% 13.200 6.600 Y Vmn1r148 n/a
20 TRCN0000202548 CAGTTTGTCACTCTTGTTCTT pLKO.1 337 CDS 100% 4.950 2.475 Y Vmn1r151 n/a
21 TRCN0000203741 CATCCTCACTCCCAATCAGAA pLKO.1 657 CDS 100% 4.950 2.475 Y Vmn1r122 n/a
22 TRCN0000187324 CATCCTCACTCCCAATCAGTA pLKO.1 657 CDS 100% 4.950 2.475 Y Vmn1r151 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_206868.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.