Transcript: Mouse NR_003373.1

Mus musculus predicted gene 15772 (Gm15772), non-coding RNA.

Source:
NCBI, updated 2017-01-31
Taxon:
Mus musculus (mouse)
Gene:
Gm15772 (100034726)
Length:
539
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_003373.1
NBCI Gene record:
Gm15772 (100034726)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NR_003373.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000434021 GGGCAAATACAAGGAAGAAAC pLKO_005 437 3UTR 100% 10.800 5.400 Y RPL26 n/a
2 TRCN0000104292 GAACCGCAAACGGCATTTCAA pLKO.1 80 3UTR 100% 5.625 2.813 Y Rpl26 n/a
3 TRCN0000104290 CCAAGTGTACAGGAAGAAGTA pLKO.1 254 3UTR 100% 4.950 2.475 Y Rpl26 n/a
4 TRCN0000104294 CTCTCACATTCGGAGGAAGAT pLKO.1 107 3UTR 100% 4.950 2.475 Y Rpl26 n/a
5 TRCN0000104291 GATGACGAAGTTCAGGTTGTT pLKO.1 195 3UTR 100% 4.950 2.475 Y Rpl26 n/a
6 TRCN0000104293 AGGTCGTTATCACCAGGCTAA pLKO.1 349 3UTR 100% 4.050 2.025 Y Rpl26 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_003373.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01428 pDONR223 100% 71.2% None (many diffs) n/a
2 ccsbBroad304_01428 pLX_304 0% 71.2% V5 (many diffs) n/a
3 TRCN0000491407 ATACTTCTGGCTACTGGTCGTCCA pLX_317 77.7% 71.2% V5 (many diffs) n/a
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