Transcript: Human NR_027264.2

Homo sapiens golgi glycoprotein 1 (GLG1), transcript variant 4, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
GLG1 (2734)
Length:
9396
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_027264.2
NBCI Gene record:
GLG1 (2734)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_027264.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000426946 GAGGTTTGCAAATCTACTATA pLKO_005 552 3UTR 100% 13.200 18.480 N GLG1 n/a
2 TRCN0000148641 CCGTTTAATCTGTGGCTTCAT pLKO.1 713 3UTR 100% 4.950 3.960 N GLG1 n/a
3 TRCN0000126381 CGAGGCAACATCACTGAGTAT pLKO.1 642 3UTR 100% 4.950 3.960 N Glg1 n/a
4 TRCN0000416594 GTGGAAAGTTATCACATTAAA pLKO_005 4845 3UTR 100% 15.000 10.500 N GLG1 n/a
5 TRCN0000434756 TACAGTAGGAGAGACATTTAT pLKO_005 5147 3UTR 100% 15.000 10.500 N GLG1 n/a
6 TRCN0000424164 CCAAGATGACGGCCATCATTT pLKO_005 682 3UTR 100% 13.200 9.240 N GLG1 n/a
7 TRCN0000443946 CCGCTTGGAGCCAGATCTATA pLKO_005 2577 3UTR 100% 13.200 9.240 N GLG1 n/a
8 TRCN0000421190 TGATCTTGCCATGCAAGTAAT pLKO_005 3525 3UTR 100% 13.200 9.240 N GLG1 n/a
9 TRCN0000149520 GAAGACCAGATCCGAATCATT pLKO.1 3082 3UTR 100% 5.625 3.938 N GLG1 n/a
10 TRCN0000149748 GCAACCTCACTGAGTTAGAAT pLKO.1 2047 3UTR 100% 5.625 3.938 N GLG1 n/a
11 TRCN0000126383 CCAGGATTATAAAGTCAGTTA pLKO.1 1109 3UTR 100% 4.950 3.465 N Glg1 n/a
12 TRCN0000146661 CCCAAGATTCAAGTTTCTGAA pLKO.1 867 3UTR 100% 4.950 3.465 N GLG1 n/a
13 TRCN0000148720 CCTGTAAAGCTGACATTCCTA pLKO.1 2951 3UTR 100% 3.000 2.100 N GLG1 n/a
14 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 6225 3UTR 100% 5.625 2.813 Y KLHL30 n/a
15 TRCN0000148469 CTGGGTTCAAGCAATTCTCTT pLKO.1 6062 3UTR 100% 4.950 2.475 Y C16orf89 n/a
16 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 6225 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_027264.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.