Transcript: Mouse NR_027664.1

Mus musculus alcohol dehydrogenase, iron containing, 1 (Adhfe1), transcript variant 2, non-coding RNA.

Source:
NCBI, updated 2015-02-15
Taxon:
Mus musculus (mouse)
Gene:
Adhfe1 (76187)
Length:
3098
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_027664.1
NBCI Gene record:
Adhfe1 (76187)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NR_027664.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000424958 TGGATTCCCTATCGAAGAATG pLKO_005 281 3UTR 100% 10.800 15.120 N Adhfe1 n/a
2 TRCN0000220911 CCCAATTTCAGGTTTAGTGAA pLKO.1 1002 3UTR 100% 4.950 6.930 N ADHFE1 n/a
3 TRCN0000412359 CCATGAAACTGTACTAATTAA pLKO_005 1388 3UTR 100% 15.000 10.500 N Adhfe1 n/a
4 TRCN0000041290 CCAGTAACTGTGCCTCTTAAA pLKO.1 517 3UTR 100% 13.200 9.240 N Adhfe1 n/a
5 TRCN0000041288 CCGTCTTATCTCCACACTTAA pLKO.1 1486 3UTR 100% 13.200 9.240 N Adhfe1 n/a
6 TRCN0000427555 GGTTTGAATGTGATGTGATTT pLKO_005 1520 3UTR 100% 13.200 9.240 N Adhfe1 n/a
7 TRCN0000428899 TGGCATGTCTTACCCAATTTC pLKO_005 990 3UTR 100% 13.200 9.240 N Adhfe1 n/a
8 TRCN0000041292 CCTCACTCTGAGTTCCTTGAT pLKO.1 466 3UTR 100% 4.950 3.465 N Adhfe1 n/a
9 TRCN0000041289 GCCAAGGAATATAATGTGGAT pLKO.1 1033 3UTR 100% 2.640 1.848 N Adhfe1 n/a
10 TRCN0000041291 GCTCTTGGTTATTCCAAGGAT pLKO.1 1264 3UTR 100% 0.300 0.210 N Adhfe1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_027664.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.