Construct: ORF ccsbBroad304_04013

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001922.1_s304c1, BRDN0000409410
Derived from:
ccsbBroadEn_04013
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
COLEC11 (78989)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_04013
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 78989 COLEC11 collectin subfamily member 11 NM_024027.5 100% 100%
2 human 78989 COLEC11 collectin subfamily member 11 NM_001255985.1 95% 95% 1_42del
3 human 78989 COLEC11 collectin subfamily member 11 NM_001255982.2 91.1% 91.1% 126_127ins72
4 human 78989 COLEC11 collectin subfamily member 11 NM_001255983.1 91.1% 91.1% 198_199ins72
5 human 78989 COLEC11 collectin subfamily member 11 NM_001255986.1 88.4% 86.3% (many diffs)
6 human 78989 COLEC11 collectin subfamily member 11 XM_005263853.4 86.6% 86.6% 1_42del;168_169ins72
7 human 78989 COLEC11 collectin subfamily member 11 XM_006711897.3 86.6% 86.6% 1_42del;240_241ins72
8 human 78989 COLEC11 collectin subfamily member 11 NM_001255984.2 82.2% 82.2% 126_127ins144
9 human 78989 COLEC11 collectin subfamily member 11 NM_199235.3 81.2% 69.5% 0_1ins88;114_192del
10 human 78989 COLEC11 collectin subfamily member 11 NM_001255988.1 79.6% 77.4% (many diffs)
11 human 78989 COLEC11 collectin subfamily member 11 NM_001255987.1 78.4% 76.3% (many diffs)
12 human 78989 COLEC11 collectin subfamily member 11 NM_001255989.1 70.9% 63.9% (many diffs)
13 human 78989 COLEC11 collectin subfamily member 11 NR_045659.2 50.2% 1_83del;410_602del;1090_1618del
14 mouse 71693 Colec11 collectin sub-family member 11 NM_027866.2 86.3% 91.5% (many diffs)
15 mouse 71693 Colec11 collectin sub-family member 11 NM_001313978.1 84.4% 89.5% (many diffs)
16 mouse 71693 Colec11 collectin sub-family member 11 XM_006515221.2 64% 68.5% (many diffs)
17 mouse 71693 Colec11 collectin sub-family member 11 XM_017315207.1 44.3% 44% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
879
ORF length:
813
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgag ggggaatctg gccctggtgg gcgttctaat cagcctggcc ttcctgtcac
121tgctgccatc tggacatcct cagccggctg gcgatgacgc ctgctctgtg cagatcctcg
181tccctggcct caaaggggat gcgggagaga agggagacaa aggcgccccc ggacggcctg
241gaagagtcgg ccccacggga gaaaaaggag acatggggga caaaggacag aaaggcagtg
301tgggtcgtca tggaaaaatt ggtcccattg gctctaaagg tgagaaagga gattccggtg
361acataggacc ccctggtcct aatggagaac caggcctccc atgtgagtgc agccagctgc
421gcaaggccat cggggagatg gacaaccagg tctctcagct gaccagcgag ctcaagttca
481tcaagaatgc tgtcgccggt gtgcgcgaga cggagagcaa gatctacctg ctggtgaagg
541aggagaagcg ctacgcggac gcccagctgt cctgccaggg ccgcgggggc acgctgagca
601tgcccaagga cgaggctgcc aatggcctga tggccgcata cctggcgcaa gccggcctgg
661cccgtgtctt catcggcatc aacgacctgg agaaggaggg cgccttcgtg tactctgacc
721actcccccat gcggaccttc aacaagtggc gcagcggtga gcccaacaat gcctacgacg
781aggaggactg cgtggagatg gtggcctcgg gcggctggaa cgacgtggcc tgccacacca
841ccatgtactt catgtgtgag tttgacaagg agaacatgtg cccaactttc ttgtacaaag
901tggttggtaa gcctatccct aaccctctcc tcggtctcga ttctacgtag taatgagcta
961gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg gatta

Download FASTA (ORF) (Full)