Transcript: Mouse NR_120376.1

Mus musculus a disintegrin and metallopeptidase domain 17 (Adam17), transcript variant 5, non-coding RNA.

Source:
NCBI, updated 2017-06-26
Taxon:
Mus musculus (mouse)
Gene:
Adam17 (11491)
Length:
4474
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_120376.1
NBCI Gene record:
Adam17 (11491)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NR_120376.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000087374 CCACTTTGGAGGTTTGTCAAT pLKO.1 651 3UTR 100% 4.950 6.930 N LOC436104 n/a
2 TRCN0000031949 CGCGACTTGAGAAGCTTGATT pLKO.1 289 3UTR 100% 5.625 4.500 N Adam17 n/a
3 TRCN0000052171 CCTGGTTACAACTCATGAATT pLKO.1 1400 3UTR 100% 0.000 0.000 N ADAM17 n/a
4 TRCN0000286912 CCTGGTTACAACTCATGAATT pLKO_005 1400 3UTR 100% 0.000 0.000 N ADAM17 n/a
5 TRCN0000031951 CCCTTGAAGAATACTTGTAAA pLKO.1 858 3UTR 100% 13.200 9.240 N Adam17 n/a
6 TRCN0000031950 CGTGGGATAATGCAGGGTTTA pLKO.1 997 3UTR 100% 10.800 7.560 N Adam17 n/a
7 TRCN0000087373 GATATGGGAACTCTTGGATTA pLKO.1 1230 3UTR 100% 10.800 7.560 N LOC436104 n/a
8 TRCN0000087377 AGAGTTTGTTCGTCGAGTGAA pLKO.1 818 3UTR 100% 4.950 3.465 N LOC436104 n/a
9 TRCN0000087376 GCCACTTTGGAGGTTTGTCAA pLKO.1 650 3UTR 100% 4.950 3.465 N LOC436104 n/a
10 TRCN0000087375 TCAAGTCTCCACAAGAGGTAA pLKO.1 1054 3UTR 100% 4.950 3.465 N LOC436104 n/a
11 TRCN0000031953 GCGACACACTTAGAAACATTA pLKO.1 387 3UTR 100% 13.200 7.920 N Adam17 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_120376.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11169 pDONR223 100% 12% None (many diffs) n/a
2 ccsbBroad304_11169 pLX_304 91.3% 12% V5 (many diffs) n/a
3 TRCN0000467718 CTCCGACATGGTCATCACCCGGCA pLX_317 68.4% 12% V5 (many diffs) n/a
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