Transcript: Human NR_121653.2

Homo sapiens TATA-box binding protein associated factor 4b (TAF4B), transcript variant 3, non-coding RNA.

Source:
NCBI, updated 2019-09-16
Taxon:
Homo sapiens (human)
Gene:
TAF4B (6875)
Length:
4871
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_121653.2
NBCI Gene record:
TAF4B (6875)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_121653.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000310315 AGCAAGTTAAGGCCCTATTTG pLKO_005 3461 3UTR 100% 13.200 18.480 N TAF4B n/a
2 TRCN0000053150 GCCGAACTCTAGCTCACAATT pLKO.1 975 3UTR 100% 13.200 18.480 N TAF4B n/a
3 TRCN0000290896 GCCGAACTCTAGCTCACAATT pLKO_005 975 3UTR 100% 13.200 18.480 N TAF4B n/a
4 TRCN0000296690 CCGAGACCACAAGTAACATAA pLKO_005 902 3UTR 100% 13.200 9.240 N TAF4B n/a
5 TRCN0000053149 GCACACTCATTCAGTCATGTA pLKO.1 2537 3UTR 100% 4.950 3.465 N TAF4B n/a
6 TRCN0000053151 GCAGAAGAATTTACTAGGAAA pLKO.1 1387 3UTR 100% 4.950 3.465 N TAF4B n/a
7 TRCN0000290827 GCAGAAGAATTTACTAGGAAA pLKO_005 1387 3UTR 100% 4.950 3.465 N TAF4B n/a
8 TRCN0000053148 GCCCAATCTTAAAGCAGAGAA pLKO.1 1197 3UTR 100% 4.950 3.465 N TAF4B n/a
9 TRCN0000290825 GCCCAATCTTAAAGCAGAGAA pLKO_005 1197 3UTR 100% 4.950 3.465 N TAF4B n/a
10 TRCN0000053152 GCTGTGAACTTGATCTCCCAA pLKO.1 2647 3UTR 100% 2.640 1.848 N TAF4B n/a
11 TRCN0000174249 GCTGTGAACTTGATCTCCCAA pLKO.1 2647 3UTR 100% 2.640 1.848 N TAF4B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_121653.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.