Transcript: Mouse NR_125913.1

Mus musculus antizyme inhibitor 1 (Azin1), transcript variant 4, non-coding RNA.

Source:
NCBI, updated 2017-05-23
Taxon:
Mus musculus (mouse)
Gene:
Azin1 (54375)
Length:
5017
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_125913.1
NBCI Gene record:
Azin1 (54375)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NR_125913.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000115397 GCCTTCGTGTATTACATGAAT pLKO.1 1670 3UTR 100% 5.625 7.875 N Azin1 n/a
2 TRCN0000306021 TCAGTCCTCTGTTGGATATTT pLKO_005 1497 3UTR 100% 15.000 12.000 N Azin1 n/a
3 TRCN0000306022 ATGTCTTTCACCCAGATATAT pLKO_005 2458 3UTR 100% 15.000 10.500 N Azin1 n/a
4 TRCN0000115399 CGTTTACACTTGCAGTCAATA pLKO.1 1581 3UTR 100% 13.200 9.240 N Azin1 n/a
5 TRCN0000325557 CGTTTACACTTGCAGTCAATA pLKO_005 1581 3UTR 100% 13.200 9.240 N Azin1 n/a
6 TRCN0000298610 TGTGATGAGCTTGATCAAATT pLKO_005 1811 3UTR 100% 13.200 9.240 N AZIN1 n/a
7 TRCN0000375151 TGTGATGAGCTTGATCAAATT pLKO_005 1811 3UTR 100% 13.200 9.240 N Azin1 n/a
8 TRCN0000115398 GCCAGCTATTTATTTCATGAT pLKO.1 1939 3UTR 100% 4.950 3.465 N Azin1 n/a
9 TRCN0000115396 GCACACTTTCTCACTTGTAAT pLKO.1 3181 3UTR 100% 13.200 7.920 N Azin1 n/a
10 TRCN0000115400 CCTGTTGGATGAAGGAACAAA pLKO.1 629 3UTR 100% 5.625 3.375 N Azin1 n/a
11 TRCN0000325635 CCTGTTGGATGAAGGAACAAA pLKO_005 629 3UTR 100% 5.625 3.375 N Azin1 n/a
12 TRCN0000293886 TGGAGATGGAAGCCCATTAAT pLKO_005 2361 3UTR 100% 15.000 10.500 N AZIN1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_125913.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03338 pDONR223 100% 24.9% None (many diffs) n/a
2 ccsbBroad304_03338 pLX_304 0% 24.9% V5 (many diffs) n/a
3 TRCN0000474491 ATCATTTAGAACTAGGCTTATAAT pLX_317 28.5% 24.9% V5 (many diffs) n/a
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