Transcript: Human NR_134891.2

Homo sapiens CNPY3-GNMT readthrough (CNPY3-GNMT), transcript variant 5, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
CNPY3-GNMT (107080644)
Length:
827
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_134891.2
NBCI Gene record:
CNPY3-GNMT (107080644)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_134891.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000000326 CAGACGGAAGGGTAAACAATA pLKO.1 786 3UTR 100% 13.200 6.600 Y GNMT n/a
2 TRCN0000416429 ACTTGACCAAGGACGTCACAA pLKO_005 364 3UTR 100% 4.950 2.475 Y GNMT n/a
3 TRCN0000000330 CCTACATTCCCTGCTACTTCA pLKO.1 607 3UTR 100% 4.950 2.475 Y GNMT n/a
4 TRCN0000000329 CATTCCCTGCTACTTCATCCA pLKO.1 611 3UTR 100% 2.640 1.320 Y GNMT n/a
5 TRCN0000000327 CCAAACCTACATTCCCTGCTA pLKO.1 602 3UTR 100% 2.640 1.320 Y GNMT n/a
6 TRCN0000000328 GATAGTGAACAACAAGGCCCA pLKO.1 395 3UTR 100% 0.540 0.270 Y GNMT n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_134891.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03008 pDONR223 100% 51.4% None (many diffs) n/a
2 ccsbBroad304_03008 pLX_304 0% 51.4% V5 (many diffs) n/a
3 TRCN0000492110 TTAATCGAGTGAAGGAAGAGGATT pLX_317 50.4% 51.4% V5 (many diffs) n/a
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