Transcript: Human NR_134948.1

Homo sapiens cytochrome c oxidase subunit 7A2 like (COX7A2L), transcript variant 7, non-coding RNA.

Source:
NCBI, updated 2019-03-14
Taxon:
Homo sapiens (human)
Gene:
COX7A2L (9167)
Length:
1942
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_134948.1
NBCI Gene record:
COX7A2L (9167)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_134948.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000046300 AGGGATTAAAGCCTGTGGTTT pLKO.1 932 3UTR 100% 4.950 6.930 N COX7A2L n/a
2 TRCN0000300406 AGGGATTAAAGCCTGTGGTTT pLKO_005 932 3UTR 100% 4.950 6.930 N COX7A2L n/a
3 TRCN0000046298 CCAACTAAACTGACCTCCGAT pLKO.1 985 3UTR 100% 2.640 2.112 N COX7A2L n/a
4 TRCN0000303977 GGTAATTTCAAAGGGTTATTT pLKO_005 1702 3UTR 100% 15.000 10.500 N COX7A2L n/a
5 TRCN0000046302 CCTGCCTGACCAAATGCTTTA pLKO.1 1101 3UTR 100% 10.800 7.560 N COX7A2L n/a
6 TRCN0000300405 CCTGCCTGACCAAATGCTTTA pLKO_005 1101 3UTR 100% 10.800 7.560 N COX7A2L n/a
7 TRCN0000046299 CCGATTCCACAGTGTATGATT pLKO.1 1001 3UTR 100% 5.625 3.938 N COX7A2L n/a
8 TRCN0000300340 CCGATTCCACAGTGTATGATT pLKO_005 1001 3UTR 100% 5.625 3.938 N COX7A2L n/a
9 TRCN0000046301 GTGTATGATTATGCTGGGAAA pLKO.1 1012 3UTR 100% 4.050 2.835 N COX7A2L n/a
10 TRCN0000076525 CTATCATATTTGCCACACCAA pLKO.1 968 3UTR 100% 2.640 1.848 N Cox7a2l n/a
11 TRCN0000076526 CAGAAGCACCACCTATCATAT pLKO.1 956 3UTR 100% 13.200 7.920 N Cox7a2l n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_134948.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15659 pDONR223 0% 16.2% None (many diffs) n/a
2 ccsbBroad304_15659 pLX_304 0% 16.2% V5 (many diffs) n/a
3 TRCN0000470747 ATTCCGCACTGTTCGGGGCTGCGC pLX_317 100% 16.2% V5 (many diffs) n/a
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