Transcript: Human NR_134960.2

Homo sapiens MYB proto-oncogene, transcription factor (MYB), transcript variant 11, non-coding RNA.

Source:
NCBI, updated 2019-09-10
Taxon:
Homo sapiens (human)
Gene:
MYB (4602)
Length:
3377
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_134960.2
NBCI Gene record:
MYB (4602)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_134960.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000040060 GCTCCTAATGTCAACCGAGAA pLKO.1 1106 3UTR 100% 4.050 5.670 N MYB n/a
2 TRCN0000288659 GCTCCTAATGTCAACCGAGAA pLKO_005 1106 3UTR 100% 4.050 5.670 N MYB n/a
3 TRCN0000010388 TAAGTGTATGGTCTCAGAACT pLKO.1 3192 3UTR 100% 4.950 3.960 N MYB n/a
4 TRCN0000295917 ACTATTCCTATTACCACATTT pLKO_005 934 3UTR 100% 13.200 9.240 N MYB n/a
5 TRCN0000040058 CCAGATTGTAAATGCTCATTT pLKO.1 2659 3UTR 100% 13.200 9.240 N MYB n/a
6 TRCN0000288599 CCAGATTGTAAATGCTCATTT pLKO_005 2659 3UTR 100% 13.200 9.240 N MYB n/a
7 TRCN0000009854 CAGATGACATCTTCCAGTCAA pLKO.1 2117 3UTR 100% 4.950 3.465 N MYB n/a
8 TRCN0000040061 CCCTCTCATCTAGTAGAAGAT pLKO.1 1733 3UTR 100% 4.950 3.465 N MYB n/a
9 TRCN0000306971 CCCTCTCATCTAGTAGAAGAT pLKO_005 1733 3UTR 100% 4.950 3.465 N MYB n/a
10 TRCN0000040062 GCATCAGAAGATGAAGACAAT pLKO.1 1994 3UTR 100% 4.950 3.465 N MYB n/a
11 TRCN0000040059 GCTATCAAGAACCACTGGAAT pLKO.1 744 3UTR 100% 4.950 3.465 N MYB n/a
12 TRCN0000288601 GCTATCAAGAACCACTGGAAT pLKO_005 744 3UTR 100% 4.950 3.465 N MYB n/a
13 TRCN0000009853 GAACAGAATGGAACAGATGAC pLKO.1 372 3UTR 100% 4.050 2.430 N MYB n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_134960.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01052 pDONR223 100% 56.8% None 1_206del;1553_1608del;2183_3377del n/a
2 ccsbBroad304_01052 pLX_304 0% 56.8% V5 1_206del;1553_1608del;2183_3377del n/a
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