Transcript: Human NR_146164.1

Homo sapiens family with sequence similarity 157 member A (FAM157A), long non-coding RNA.

Source:
NCBI, updated 2018-05-20
Taxon:
Homo sapiens (human)
Gene:
FAM157A (728262)
Length:
6879
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_146164.1
NBCI Gene record:
FAM157A (728262)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_146164.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000339043 AGCACGAGGGTCGTGTTAACT pLKO_005 894 3UTR 100% 5.625 3.375 N FAM157A n/a
2 TRCN0000339045 AGAAACCAAGTGAGGACATTT pLKO_005 24 3UTR 100% 13.200 6.600 Y FAM157A n/a
3 TRCN0000082510 CCAGTCTCATGTTGAAGATTT pLKO.1 1562 3UTR 100% 13.200 6.600 Y LOC388573 n/a
4 TRCN0000337371 CTGCCCGAGGAAAGGTATTTC pLKO_005 720 3UTR 100% 13.200 6.600 Y FAM157B n/a
5 TRCN0000202692 CTTGGCCTCTAATTTGTTTAT pLKO.1 6787 3UTR 100% 13.200 6.600 Y LINC01002 n/a
6 TRCN0000337370 GAAACCAAGTGAGGACATTTA pLKO_005 25 3UTR 100% 13.200 6.600 Y FAM157B n/a
7 TRCN0000338978 GCTGCCCGAGGAAAGGTATTT pLKO_005 719 3UTR 100% 13.200 6.600 Y FAM157A n/a
8 TRCN0000337372 TTCACCAGAGGATCCAGATTT pLKO_005 111 3UTR 100% 13.200 6.600 Y FAM157B n/a
9 TRCN0000338976 TCACCAGAGGATCCAGATTTC pLKO_005 112 3UTR 100% 10.800 5.400 Y FAM157A n/a
10 TRCN0000188863 GCACAGCTCCATCGTTACAAT pLKO.1 2994 3UTR 100% 5.625 2.813 Y LOC401357 n/a
11 TRCN0000187321 CAGCAAGTAAGCAAGCTCTTT pLKO.1 3748 3UTR 100% 4.950 2.475 Y LINC01002 n/a
12 TRCN0000082511 CTACCATGAAAGACTTGTGAA pLKO.1 2533 3UTR 100% 4.950 2.475 Y LOC388573 n/a
13 TRCN0000204496 CTGCCTCTCAACAACCTCTTT pLKO.1 3485 3UTR 100% 4.950 2.475 Y LINC01002 n/a
14 TRCN0000082508 GCTGGAGTGTAGTAGTGCTAT pLKO.1 2613 3UTR 100% 4.950 2.475 Y LOC388573 n/a
15 TRCN0000204513 CCAGCAAGTAAGCAAGCTCTT pLKO.1 3747 3UTR 100% 4.050 2.025 Y LINC01002 n/a
16 TRCN0000082593 CCATCGTTACAATGGCCTCTT pLKO.1 3002 3UTR 100% 4.050 2.025 Y LOC442558 n/a
17 TRCN0000188825 CTGAAGAGCTTGGTTGCAGAA pLKO.1 5772 3UTR 100% 4.050 2.025 Y LINC01002 n/a
18 TRCN0000204287 CCCTGAACTTTCTCAAGTCGA pLKO.1 3059 3UTR 100% 2.640 1.320 Y LOC401357 n/a
19 TRCN0000082512 GCCTCAACCTTCCAGGCTGAA pLKO.1 2648 3UTR 100% 1.350 0.675 Y LOC388573 n/a
20 TRCN0000188484 CAATGGCCTATTTAGGCCCAT pLKO.1 2915 3UTR 100% 0.216 0.108 Y LOC401357 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_146164.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.