Transcript: Human NM_001098270.1

Homo sapiens beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase (MGAT3), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-22
Taxon:
Homo sapiens (human)
Gene:
MGAT3 (4248)
Length:
4987
CDS:
125..1726

Additional Resources:

NCBI RefSeq record:
NM_001098270.1
NBCI Gene record:
MGAT3 (4248)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001098270.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000035779 GAGTCCAACTTCACGGCTTAT pLKO.1 839 CDS 100% 10.800 15.120 N MGAT3 n/a
2 TRCN0000423222 CAAGTCGCTCTACGGCTTCTT pLKO_005 1159 CDS 100% 4.950 6.930 N MGAT3 n/a
3 TRCN0000434939 TCAACGTCAACCACGAGTTCG pLKO_005 759 CDS 100% 4.050 5.670 N MGAT3 n/a
4 TRCN0000035781 CGAGGACACCACCGAGTATTT pLKO.1 427 CDS 100% 13.200 10.560 N MGAT3 n/a
5 TRCN0000035780 GTACTACACCATGCCCAACTT pLKO.1 1279 CDS 100% 4.950 3.465 N MGAT3 n/a
6 TRCN0000035783 GACGTCTTCATCATTGACGAT pLKO.1 1055 CDS 100% 2.640 1.848 N MGAT3 n/a
7 TRCN0000035782 CCTCATCTCCTTCCTGCACTT pLKO.1 178 CDS 100% 4.050 2.430 N MGAT3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001098270.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01006 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_01006 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000479948 TATGACATTGGACCAAAACCCTAC pLX_317 23.3% 100% 100% V5 n/a
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