Transcript: Mouse XM_006500067.1

PREDICTED: Mus musculus translocase of outer mitochondrial membrane 34 (Tomm34), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Tomm34 (67145)
Length:
1996
CDS:
202..1131

Additional Resources:

NCBI RefSeq record:
XM_006500067.1
NBCI Gene record:
Tomm34 (67145)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006500067.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000114198 GCAGTACAAGGAGGCAGTAAA pLKO.1 924 CDS 100% 13.200 9.240 N Tomm34 n/a
2 TRCN0000309384 GCAGTACAAGGAGGCAGTAAA pLKO_005 924 CDS 100% 13.200 9.240 N Tomm34 n/a
3 TRCN0000114199 CTACAAATTGAACCCAGGAAT pLKO.1 1063 CDS 100% 4.950 3.465 N Tomm34 n/a
4 TRCN0000309386 CTACAAATTGAACCCAGGAAT pLKO_005 1063 CDS 100% 4.950 3.465 N Tomm34 n/a
5 TRCN0000114197 GCAGGAAGTTAACCAGAACAT pLKO.1 1104 CDS 100% 4.950 3.465 N Tomm34 n/a
6 TRCN0000309319 GCAGGAAGTTAACCAGAACAT pLKO_005 1104 CDS 100% 4.950 3.465 N Tomm34 n/a
7 TRCN0000114196 CGATGTTCAAAGAGCCCAGAT pLKO.1 1780 3UTR 100% 4.050 2.835 N Tomm34 n/a
8 TRCN0000309385 CGATGTTCAAAGAGCCCAGAT pLKO_005 1780 3UTR 100% 4.050 2.835 N Tomm34 n/a
9 TRCN0000114200 CCTTGTAAAGAAGGGCAACCA pLKO.1 807 CDS 100% 2.640 1.848 N Tomm34 n/a
10 TRCN0000331935 CCTTGTAAAGAAGGGCAACCA pLKO_005 807 CDS 100% 2.640 1.848 N Tomm34 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006500067.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02571 pDONR223 100% 88.5% 88% None (many diffs) n/a
2 ccsbBroad304_02571 pLX_304 0% 88.5% 88% V5 (many diffs) n/a
3 TRCN0000468497 AAGCTCCCAATCTCAGCATTACCC pLX_317 44.2% 88.5% 88% V5 (many diffs) n/a
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