Transcript: Human XM_011527071.1

PREDICTED: Homo sapiens zinc finger protein 444 (ZNF444), transcript variant X13, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZNF444 (55311)
Length:
2140
CDS:
858..1448

Additional Resources:

NCBI RefSeq record:
XM_011527071.1
NBCI Gene record:
ZNF444 (55311)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011527071.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000017619 GACAGTGGGATGATTCCCTTA pLKO.1 849 5UTR 100% 4.050 2.835 N ZNF444 n/a
2 TRCN0000315345 GATGATTCCCTTAGCAGGCAC pLKO_005 857 5UTR 100% 2.160 1.512 N ZNF444 n/a
3 TRCN0000017618 GCGCCTCCCTTGTCTGAACTT pLKO.1 1568 3UTR 100% 1.650 1.155 N ZNF444 n/a
4 TRCN0000315344 GCGCCTCCCTTGTCTGAACTT pLKO_005 1568 3UTR 100% 1.650 1.155 N ZNF444 n/a
5 TRCN0000017622 CCACAGGTGGAAAGGAGGACA pLKO.1 832 5UTR 100% 0.880 0.616 N ZNF444 n/a
6 TRCN0000017620 GCAGAGCCACTCGGGCGAGAA pLKO.1 1058 CDS 100% 0.000 0.000 N ZNF444 n/a
7 TRCN0000350424 GCAGAGCCACTCGGGCGAGAA pLKO_005 1058 CDS 100% 0.000 0.000 N ZNF444 n/a
8 TRCN0000315284 AGGAGGACAGTGGGATGATTC pLKO_005 844 5UTR 100% 10.800 6.480 N ZNF444 n/a
9 TRCN0000017621 AGTGTGGCAAGACCTTCTACT pLKO.1 1225 CDS 100% 4.950 2.970 N ZNF444 n/a
10 TRCN0000350425 AGTGTGGCAAGACCTTCTACT pLKO_005 1225 CDS 100% 4.950 2.970 N ZNF444 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011527071.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14197 pDONR223 98.8% 59.6% 59.6% None 0_1ins393;12_14delAGC n/a
2 ccsbBroad304_14197 pLX_304 0% 59.6% 59.6% V5 0_1ins393;12_14delAGC n/a
3 TRCN0000467702 TCAATTATCACTAGGGGATGGATA pLX_317 21.8% 59.6% 59.6% V5 0_1ins393;12_14delAGC n/a
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