Transcript: Human XM_017024035.1

PREDICTED: Homo sapiens RUN domain containing 3A (RUNDC3A), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
RUNDC3A (10900)
Length:
2131
CDS:
275..1699

Additional Resources:

NCBI RefSeq record:
XM_017024035.1
NBCI Gene record:
RUNDC3A (10900)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017024035.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000072904 CCTAAAGTTCACGCAGAGCTA pLKO.1 886 CDS 100% 2.640 2.112 N RUNDC3A n/a
2 TRCN0000072907 GAAGCGCATGTCAGAATACAT pLKO.1 679 CDS 100% 5.625 3.938 N RUNDC3A n/a
3 TRCN0000072905 CATCGAGAACATGGAGAACAT pLKO.1 607 CDS 100% 4.950 3.465 N RUNDC3A n/a
4 TRCN0000072906 TGTGAGCAGCATCGAGAACAT pLKO.1 598 CDS 100% 4.950 3.465 N RUNDC3A n/a
5 TRCN0000165027 GAACTCCTGACCTCAAGTGAT pLKO.1 1499 CDS 100% 4.950 2.475 Y LOC387873 n/a
6 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 1536 CDS 100% 5.625 2.813 Y KLHL30 n/a
7 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 1536 CDS 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017024035.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07701 pDONR223 100% 85% 84.5% None (many diffs) n/a
2 ccsbBroad304_07701 pLX_304 0% 85% 84.5% V5 (many diffs) n/a
3 TRCN0000467002 GGTTATATTCTAATGCGACATACC pLX_317 35.8% 85% 84.5% V5 (many diffs) n/a
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