Transcript: Mouse XM_011241195.2

PREDICTED: Mus musculus catenin (cadherin associated protein), alpha 2 (Ctnna2), transcript variant X4, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ctnna2 (12386)
Length:
4173
CDS:
353..3064

Additional Resources:

NCBI RefSeq record:
XM_011241195.2
NBCI Gene record:
Ctnna2 (12386)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011241195.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000108889 CCGGGTCATTCACATCATCAA pLKO.1 2035 CDS 100% 4.950 6.930 N Ctnna2 n/a
2 TRCN0000108885 CCCGTCTCAAATGTTTCTTTA pLKO.1 3812 3UTR 100% 13.200 10.560 N Ctnna2 n/a
3 TRCN0000108887 CGGGTCATTCACATCATCAAT pLKO.1 2036 CDS 100% 5.625 4.500 N Ctnna2 n/a
4 TRCN0000108888 CGTCTTATGTAGCCTCAACTA pLKO.1 3043 CDS 100% 4.950 3.960 N Ctnna2 n/a
5 TRCN0000108886 GCCCTGAATGAGTTTGATAAT pLKO.1 1226 CDS 100% 13.200 9.240 N Ctnna2 n/a
6 TRCN0000147992 GAGGTAGATTGTGATGTCATA pLKO.1 2855 CDS 100% 4.950 3.465 N CTNNA2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011241195.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06063 pDONR223 100% 78.2% 85.6% None (many diffs) n/a
2 ccsbBroad304_06063 pLX_304 0% 78.2% 85.6% V5 (many diffs) n/a
Download CSV