Transcript: Mouse XM_006517336.3

PREDICTED: Mus musculus ATP/GTP binding protein 1 (Agtpbp1), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Agtpbp1 (67269)
Length:
4575
CDS:
316..3972

Additional Resources:

NCBI RefSeq record:
XM_006517336.3
NBCI Gene record:
Agtpbp1 (67269)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006517336.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000306489 TAAATTCAGTGTGTCCGAATA pLKO_005 4285 3UTR 100% 10.800 15.120 N Agtpbp1 n/a
2 TRCN0000031454 GCGTAAAGAAAGGAGTGGTAA pLKO.1 1727 CDS 100% 4.950 6.930 N Agtpbp1 n/a
3 TRCN0000306488 AGATTGGCACCGGCATGATAA pLKO_005 1077 CDS 100% 13.200 10.560 N Agtpbp1 n/a
4 TRCN0000031458 CGGCATAGAAACATGCTCATT pLKO.1 1099 CDS 100% 4.950 3.960 N Agtpbp1 n/a
5 TRCN0000332562 CGGCATAGAAACATGCTCATT pLKO_005 1099 CDS 100% 4.950 3.960 N Agtpbp1 n/a
6 TRCN0000031455 CCTAAGATACTGAGCCACATT pLKO.1 3463 CDS 100% 4.950 3.465 N Agtpbp1 n/a
7 TRCN0000031457 GCGAGTTTCTTAGTTGCCAAA pLKO.1 619 CDS 100% 4.050 2.835 N Agtpbp1 n/a
8 TRCN0000332493 GCGAGTTTCTTAGTTGCCAAA pLKO_005 619 CDS 100% 4.050 2.835 N Agtpbp1 n/a
9 TRCN0000031456 CCAGACCTCTATATTGAGATT pLKO.1 2170 CDS 100% 4.950 2.970 N Agtpbp1 n/a
10 TRCN0000354231 CCAGACCTCTATATTGAGATT pLKO_005 2170 CDS 100% 4.950 2.970 N Agtpbp1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006517336.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02745 pDONR223 100% 81.5% 87% None (many diffs) n/a
2 ccsbBroad304_02745 pLX_304 0% 81.5% 87% V5 (many diffs) n/a
3 TRCN0000467358 GCAACTTTACACCAATTTTGTATC pLX_317 11.7% 81.5% 87% V5 (many diffs) n/a
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