Construct: ORF TRCN0000467358
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002884.1_s317c1
- Derived from:
- ccsbBroadEn_02745
- DNA Barcode:
- GCAACTTTACACCAATTTTGTATC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- AGTPBP1 (23287)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000467358
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23287 | AGTPBP1 | ATP/GTP binding protein 1 | NM_015239.2 | 100% | 100% | |
| 2 | human | 23287 | AGTPBP1 | ATP/GTP binding protein 1 | NM_001330701.1 | 96.7% | 96.7% | 910_1029del |
| 3 | human | 23287 | AGTPBP1 | ATP/GTP binding protein 1 | XM_005251848.2 | 96.7% | 96.7% | 910_1029del |
| 4 | human | 23287 | AGTPBP1 | ATP/GTP binding protein 1 | XM_017014545.1 | 95.4% | 95.3% | (many diffs) |
| 5 | human | 23287 | AGTPBP1 | ATP/GTP binding protein 1 | NM_001286717.1 | 94.4% | 94.3% | 1_181delinsA;187_187delCins25 |
| 6 | human | 23287 | AGTPBP1 | ATP/GTP binding protein 1 | XM_011518418.2 | 92.3% | 92.2% | (many diffs) |
| 7 | human | 23287 | AGTPBP1 | ATP/GTP binding protein 1 | NM_001286715.1 | 91.5% | 91.4% | 1_181delinsA;187_187delCins25;1066_1185del |
| 8 | human | 23287 | AGTPBP1 | ATP/GTP binding protein 1 | XM_017014546.1 | 90% | 90% | 0_1ins354 |
| 9 | human | 23287 | AGTPBP1 | ATP/GTP binding protein 1 | XM_005251849.3 | 87.1% | 87.1% | 0_1ins354;556_675del |
| 10 | human | 23287 | AGTPBP1 | ATP/GTP binding protein 1 | XM_017014547.1 | 82.7% | 82.6% | (many diffs) |
| 11 | human | 23287 | AGTPBP1 | ATP/GTP binding protein 1 | XR_001746261.1 | 80.9% | (many diffs) | |
| 12 | human | 23287 | AGTPBP1 | ATP/GTP binding protein 1 | XM_017014548.2 | 75.1% | 75.1% | 0_1ins795;115_234del |
| 13 | human | 23287 | AGTPBP1 | ATP/GTP binding protein 1 | XM_024447472.1 | 75.1% | 75.1% | 0_1ins795;115_234del |
| 14 | human | 23287 | AGTPBP1 | ATP/GTP binding protein 1 | XM_011518420.2 | 73.3% | 72.8% | (many diffs) |
| 15 | human | 23287 | AGTPBP1 | ATP/GTP binding protein 1 | XM_017014549.1 | 70.7% | 70.6% | (many diffs) |
| 16 | human | 23287 | AGTPBP1 | ATP/GTP binding protein 1 | XM_011518421.2 | 53.1% | 51.2% | (many diffs) |
| 17 | human | 23287 | AGTPBP1 | ATP/GTP binding protein 1 | XM_017014550.1 | 53.1% | 51.2% | (many diffs) |
| 18 | mouse | 67269 | Agtpbp1 | ATP/GTP binding protein 1 | NM_023328.3 | 81.5% | 87% | (many diffs) |
| 19 | mouse | 67269 | Agtpbp1 | ATP/GTP binding protein 1 | XM_006517335.2 | 81.5% | 87% | (many diffs) |
| 20 | mouse | 67269 | Agtpbp1 | ATP/GTP binding protein 1 | XM_006517336.3 | 81.5% | 87% | (many diffs) |
| 21 | mouse | 67269 | Agtpbp1 | ATP/GTP binding protein 1 | XM_006517337.3 | 81.5% | 87% | (many diffs) |
| 22 | mouse | 67269 | Agtpbp1 | ATP/GTP binding protein 1 | XM_006517338.3 | 81.5% | 87% | (many diffs) |
| 23 | mouse | 67269 | Agtpbp1 | ATP/GTP binding protein 1 | XM_006517339.2 | 78.1% | 83.5% | (many diffs) |
| 24 | mouse | 67269 | Agtpbp1 | ATP/GTP binding protein 1 | XM_011244556.2 | 78.1% | 83.5% | (many diffs) |
| 25 | mouse | 67269 | Agtpbp1 | ATP/GTP binding protein 1 | NM_001284221.1 | 77.9% | 82.1% | (many diffs) |
| 26 | mouse | 67269 | Agtpbp1 | ATP/GTP binding protein 1 | XM_011244555.2 | 77.9% | 82.1% | (many diffs) |
| 27 | mouse | 67269 | Agtpbp1 | ATP/GTP binding protein 1 | XM_006517340.3 | 77.5% | 82.9% | (many diffs) |
| 28 | mouse | 67269 | Agtpbp1 | ATP/GTP binding protein 1 | XM_006517342.3 | 74.1% | 79.4% | (many diffs) |
| 29 | mouse | 67269 | Agtpbp1 | ATP/GTP binding protein 1 | XM_011244557.2 | 73.9% | 78.6% | (many diffs) |
| 30 | mouse | 67269 | Agtpbp1 | ATP/GTP binding protein 1 | NM_001284219.1 | 62.9% | 67.7% | (many diffs) |
| 31 | mouse | 67269 | Agtpbp1 | ATP/GTP binding protein 1 | NM_001048008.2 | 51% | 52.6% | (many diffs) |
| 32 | mouse | 67269 | Agtpbp1 | ATP/GTP binding protein 1 | NM_001284218.1 | 51% | 52.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 3624
- ORF length:
- 3558
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgag caagttaaaa gtgataccag aaaaaagcct taccaataat tctaggatcg 121 taggactcct ggctcaactg gagaagatca atgctgagcc ttcagaatca gacactgccc 181 gatatgttac atcaaaaatt cttcatctgg ctcagagtca agaaaaaaca aggagagaaa 241 tgacagccaa aggttctaca ggaatggaaa ttctgctgtc aacattagag aacacaaaag 301 atcttcaaac tacacttaat atcttaagca ttcttgttga gctggtgtca gctggtggag 361 gtcgaagagt gagtttctta gtcaccaaag gtggttcaca aatattgttg cagttactta 421 tgaatgccag caaagaatct cccccacatg aggacttaat ggtacagatt cattctattc 481 ttgcaaagat tggaccaaaa gataaaaaat ttggagtaaa ggctagaatt aatggggctc 541 tgaatataac cctgaatttg gtcaagcaga atttgcagaa tcatcgcttg gttctacctt 601 gccttcagct tttacgagta tattctgcca actctgtgaa ttcagtatcc ttagggaaaa 661 atggagttgt ggaactgatg tttaaaatca ttggaccatt tagtaagaag aattccagtc 721 ttataaaggt tgctttagac actcttgctg cattgctaaa atcaaaaaca aatgccagga 781 gagctgtaga cagaggatat gtccaagtgc ttttaacaat ttatgtagat tggcaccgcc 841 atgataaccg gcatagaaac atgctcattc ggaaaggaat tttacagagt ttaaaaagtg 901 ttacaaacat caagttggga agaaaagcat ttattgatgc caatgggatg aaaattctgt 961 ataatacttc gcaattgcct gttattcctg tgactggtcc tgtggctcag ctctacagct 1021 tacctcctga agtggatgac gtagtagatg aaagtgatga caacgatgat attgatgtag 1081 aagctgaaaa cgaaactgag aatgaagatg acctagatca aaattttaag aatgatgata 1141 ttgaaacaga tattaacaaa ctaaaacccc agcaagaacc gggacgaaca atagaagatc 1201 taaaaatgta tgaacacctt ttccctgagc ttgttgatga ttttcaggac tatgatttaa 1261 tctccaaaga accaaagcct tttgtatttg agggaaaagt acgtggtcct attgttgttc 1321 ctacggcagg cgaggaaaca tctgggaatt ctggcaattt aagaaaagtt gtaatgaagg 1381 agaacatatc ttctaaagga gatgaaggtg aaaagaagtc tacctttatg gatctagcaa 1441 aagaagatat taaagataat gatagaacat tacaacagca gccaggtgat caaaatagaa 1501 ctatttcatc agtccatggt ttaaacaatg atattgtaaa ggccttggac cgaattacat 1561 tgcagaatat tccttctcaa acagccccag gttttactgc agaaatgaag aaggactgca 1621 gtcttcctct tactgtcctt acctgtgcta aagcatgtcc acacatggct acttgtggaa 1681 atgttctgtt tgagggaaga acagttcagc tagggaagct ttgctgcact ggagttgaaa 1741 ctgaagatga tgaagatact gagtcaaatt catcggtaga acaagcatcg gttgaagtac 1801 ctgatggacc aacactccat gacccagacc tctatattga gattgtgaaa aatacgaagt 1861 ctgtcccaga atattcagag gtggcttatc ccgattattt tggtcacatt ccgcctccat 1921 tcaaagagcc tattttagaa aggccttatg gtgtacaaag gacaaaaatt gctcaagata 1981 ttgaaaggct aatacatcag agtgatatca tagatcgtgt ggtatatgac ttggataacc 2041 caaattacac cattccagaa gagggagata ttttgaaatt taactccaaa tttgagtctg 2101 ggaatctgcg caaagtaatt caaattagaa aaaatgaata tgatcttatt ctgaactcag 2161 acataaacag caatcattat catcagtggt tttactttga agtcagtgga atgcgaccag 2221 gtgttgctta caggtttaac atcattaact gtgaaaagtc caacagtcag tttaattatg 2281 gtatgcaacc actcatgtat tcggttcagg aagcattaaa tgccagacca tggtggattc 2341 gtatggggac tgacatttgt tactataaaa atcatttctc aagaagttca gttgctgcag 2401 gtgggcaaaa gggaaaatcc tactatacaa ttacatttac tgtcaatttt ccacataaag 2461 atgatgtttg ctactttgct tatcactatc catatacgta ttcaacttta cagatgcatc 2521 ttcaaaaatt ggaatcagca cacaatcctc agcaaatcta ttttcggaaa gatgtgttat 2581 gtgaaaccct gtctggaaac agctgcccct tggtgactat aacagcaatg ccagagtcta 2641 attattatga acatatctgc catttcagaa atcgccctta cgttttcttg tctgctcggg 2701 tacatcctgg agaaactaat gcaagttggg ttatgaaagg aacgttggaa tatctcatga 2761 gcaataaccc cactgctcag agcttacgag aatcttatat ttttaaaatt gtccctatgt 2821 taaatccaga tggtgtcatc aatggaaatc atcgctgttc tttaagtgga gaggatttga 2881 ataggcagtg gcaaagtcca agtccggatt tacatcctac aatttaccat gctaaggggc 2941 tgttgcaata cttggctgca gtgaagcgtt tacccttggt ttattgtgat tatcatggcc 3001 attcccgaaa gaagaatgta tttatgtatg gttgcagcat caaagagaca gtgtggcata 3061 ccaatgataa tgcaacttca tgtgatgttg tggaggatac gggatacagg acattgccta 3121 agatactgag ccatatcgcc ccagcatttt gcatgagcag ctgtagcttc gtagtggaaa 3181 aatctaaaga atccacagca cgtgttgtag tttGGAGGGA AATAGGAGTA CAAAGAAGTT 3241 ATACCATGGA GAGTACTTTA TGTGGCTGTG ATCAGGGAAA ATACAAGGGT TTACAGATTG 3301 GTACCCGAGA ACTGGAAGAG ATGGGAGCAA AATTTTGTGT TGGTCTTTTA CGTTTGAAAA 3361 GACTGACCTC TCCATTGGAG TATAATCTGC CTTCCAGCCT GCTTGACTTT GAAAATGATT 3421 TAATTGAATC AAGCTGCAAA GTAACTAGCC CTACCACTTA TGTCTTGGAT GAAGATGAAC 3481 CTCGATTCCT TGAAGAAGTT GATTACAGTG CAGAAAGTAA TGATGAGTTA GATATTGAGT 3541 TGGCTGAAAA TGTAGGAGAT TATGAACCTT CTGCTCAAGA AGAAGTACTT TCTGACTCTG 3601 AATTATCAAG AACATACCTA CCTTGCCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA 3661 AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC 3721 TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAG CAACTTTACA 3781 CCAATTTTGT ATCACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag 3841 att