Transcript: Human NM_001329693.1

Homo sapiens O-acyl-ADP-ribose deacylase 1 (OARD1), transcript variant 10, mRNA.

Source:
NCBI, updated 2019-02-25
Taxon:
Homo sapiens (human)
Gene:
OARD1 (221443)
Length:
1249
CDS:
338..598

Additional Resources:

NCBI RefSeq record:
NM_001329693.1
NBCI Gene record:
OARD1 (221443)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001329693.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000439649 GACCGGGCAAACCTACCTTAA pLKO_005 742 3UTR 100% 10.800 15.120 N OARD1 n/a
2 TRCN0000414259 CTGAAGAGAGATGGGCGATAT pLKO_005 548 CDS 100% 10.800 8.640 N OARD1 n/a
3 TRCN0000128685 CATTCCAGTTAGTTTGGCATT pLKO.1 1054 3UTR 100% 4.050 3.240 N OARD1 n/a
4 TRCN0000217524 GAAGAGAGATGGGCGATATAT pLKO.1 550 CDS 100% 15.000 10.500 N Oard1 n/a
5 TRCN0000428045 ACTCTGAACCAGTGAACATTT pLKO_005 677 3UTR 100% 13.200 9.240 N OARD1 n/a
6 TRCN0000129418 GCGATGATCGAGGAGGTATTT pLKO.1 624 3UTR 100% 13.200 9.240 N OARD1 n/a
7 TRCN0000250272 TGAAGAGAGATGGGCGATATA pLKO_005 549 CDS 100% 13.200 9.240 N Oard1 n/a
8 TRCN0000436540 GGAAGCAGAATCACTTATGTG pLKO_005 368 CDS 100% 4.950 3.465 N OARD1 n/a
9 TRCN0000129341 CTTGATCGTCTGCAATGGGAA pLKO.1 594 CDS 100% 2.640 1.848 N OARD1 n/a
10 TRCN0000429881 CTTATGTGAAAGGAGACCTTT pLKO_005 381 CDS 100% 4.950 2.970 N OARD1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001329693.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05258 pDONR223 100% 56.5% 53.2% None 242_243ins113;258_259ins85 n/a
2 ccsbBroad304_05258 pLX_304 0% 56.5% 53.2% V5 242_243ins113;258_259ins85 n/a
3 TRCN0000467916 GTTTTAGAGTGACGTATAGCATAC pLX_317 95.3% 56.5% 53.2% V5 242_243ins113;258_259ins85 n/a
4 ccsbBroadEn_09872 pDONR223 100% 56.1% 51.9% None (many diffs) n/a
5 ccsbBroad304_09872 pLX_304 0% 56.1% 51.9% V5 (many diffs) n/a
6 TRCN0000477840 TAGCGAACTCCGCCAAACTGCGCA pLX_317 65.1% 56.1% 51.9% V5 (many diffs) n/a
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