Transcript: Human XM_017017462.2

PREDICTED: Homo sapiens mitochondrial carrier 2 (MTCH2), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
MTCH2 (23788)
Length:
2404
CDS:
70..822

Additional Resources:

NCBI RefSeq record:
XM_017017462.2
NBCI Gene record:
MTCH2 (23788)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017017462.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000059393 CCTCCAACAATAGGACGAAAT pLKO.1 175 CDS 100% 10.800 15.120 N MTCH2 n/a
2 TRCN0000059397 GCCTACCTCGTCAATACCTAT pLKO.1 640 CDS 100% 4.950 6.930 N MTCH2 n/a
3 TRCN0000286609 GCCTACCTCGTCAATACCTAT pLKO_005 640 CDS 100% 4.950 6.930 N MTCH2 n/a
4 TRCN0000114240 TCCTCCAACAATAGGACGAAA pLKO.1 174 CDS 100% 4.950 6.930 N Mtch2 n/a
5 TRCN0000059396 CCCAATATATACGTCTTGGAT pLKO.1 751 CDS 100% 3.000 4.200 N MTCH2 n/a
6 TRCN0000293986 AGCCGAGGAAATAGCTTATTT pLKO_005 809 CDS 100% 15.000 12.000 N MTCH2 n/a
7 TRCN0000294027 CCAGAATCTGACTCCCATTAT pLKO_005 1343 3UTR 100% 13.200 9.240 N MTCH2 n/a
8 TRCN0000295556 AGCCGCTCATGTACGTGAAAG pLKO_005 125 CDS 100% 10.800 7.560 N Mtch2 n/a
9 TRCN0000059394 GCCTTCTAGGTGACATCCTTT pLKO.1 596 CDS 100% 4.950 3.465 N MTCH2 n/a
10 TRCN0000286674 GCCTTCTAGGTGACATCCTTT pLKO_005 596 CDS 100% 4.950 3.465 N MTCH2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017017462.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02842 pDONR223 100% 82.5% 73.8% None 277_278ins27;654_655ins68;750_751ins64 n/a
2 ccsbBroad304_02842 pLX_304 0% 82.5% 73.8% V5 277_278ins27;654_655ins68;750_751ins64 n/a
3 TRCN0000479897 AATCAAGAAGGGCGTCCGCATTCG pLX_317 39.1% 82.5% 73.8% V5 277_278ins27;654_655ins68;750_751ins64 n/a
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